Name: Saonia flava DSM 29762
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140375

Type strain:

Species: Saonia flava

Culture col. no.: DSM 29762, CIP 110873, MOLA 117

Strain history: CIP <- 2015, L. Intertaglia, Observ. Oceanologique, Banyuls sur mer, France: strain MoLA 117 <- CR41/23a

NCBI tax ID(s): 523696 (species)

SI-ID 402202

DSM 29762, CIP 110873

Special Collections

Section

Saonia flava DSM 29762 is an aerobe, chemoorganoheterotroph, Gram-negative bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
chemoorganoheterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Saonia*
	Species	**Saonia flava**
	Full Scientific Name (LPSN)	Saonia flava Fagervold et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43479]	Gram stain	negative
[Ref.: #119365]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97

[Ref.: #43479]	Cell length	1.5-3.4 µm

[Ref.: #43479]	Cell width	0.5-0.6 µm

[Ref.: #43479]	Cell shape	rod-shaped
[Ref.: #119365]	Cell shape	rod-shaped

[Ref.: #43479]	Motility	no
[Ref.: #119365]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.5

[Ref.: #43479]	Colony color	yellow, smooth
[Ref.: #43479]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43479]

Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #119365]

Culture medium

CIP Medium 13

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #42982]		growth	28 °C
[Ref.: #43479]	no	growth	4 °C
[Ref.: #43479]	no	growth	37 °C
[Ref.: #43479]	no	growth	42 °C
[Ref.: #43479]		growth	15-30 °C

	pH	Kind of pH		pH
[Ref.: #43479]			optimum	7
[Ref.: #43479]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43479]

Oxygen tolerance

aerobe

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Nutrition type

chemoorganoheterotroph

[Ref.: #43479]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %92.306
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43479]		NaCl		growth	1-4	%(w/v)
[Ref.: #43479]		NaCl		optimum	3	%(w/v)

[Ref.: #43479]

Observation

required NaCl for growth

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43479]	acetate ChEBI	-	carbon source
[Ref.: #43479]	adipate ChEBI	-	assimilation
[Ref.: #43479]	arabinose ChEBI	+	carbon source
[Ref.: #43479]	cellobiose ChEBI	+	carbon source
[Ref.: #43479]	citrate ChEBI	-	carbon source
[Ref.: #43479]	D-glucose ChEBI	-	assimilation
[Ref.: #43479]	D-glucose ChEBI	-	fermentation
[Ref.: #43479]	D-mannitol ChEBI	-	assimilation
[Ref.: #43479]	D-mannose ChEBI	-	assimilation
[Ref.: #43479]	decanoate ChEBI	-	assimilation
[Ref.: #43479]	dextran ChEBI	+	carbon source
[Ref.: #43479]	esculin ChEBI	+	builds acid from
[Ref.: #43479]	esculin ChEBI	+	hydrolysis
[Ref.: #43479]	formate ChEBI	-	carbon source
[Ref.: #43479]	fructose ChEBI	+	builds acid from
[Ref.: #43479]	fumarate ChEBI	-	carbon source
[Ref.: #43479]	galactose ChEBI	+	carbon source
[Ref.: #43479]	gelatin ChEBI	-	hydrolysis
[Ref.: #43479]	glucose ChEBI	+	carbon source
[Ref.: #43479]	glutamate ChEBI	-	carbon source
[Ref.: #43479]	glycerol ChEBI	+	carbon source
[Ref.: #43479]	inulin ChEBI	+	builds acid from
[Ref.: #43479]	L-arabinose ChEBI	-	assimilation
[Ref.: #43479]	lactate ChEBI	+	carbon source
[Ref.: #43479]	lactose ChEBI	-	carbon source
[Ref.: #43479]	malate ChEBI	-	assimilation
[Ref.: #43479]	maltose ChEBI	-	assimilation
[Ref.: #43479]	maltose ChEBI	+	carbon source
[Ref.: #43479]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43479]	phenylacetate ChEBI	-	assimilation
[Ref.: #43479]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43479]	pyruvate ChEBI	-	carbon source
[Ref.: #43479]	raffinose ChEBI	+	builds acid from
[Ref.: #43479]	sodium citrate ChEBI	-	assimilation
[Ref.: #43479]	sorbitol ChEBI	+	carbon source
[Ref.: #43479]	starch ChEBI	+	builds acid from
[Ref.: #43479]	succinate ChEBI	-	carbon source
[Ref.: #43479]	sucrose ChEBI	+	builds acid from
[Ref.: #43479]	sucrose ChEBI	+	carbon source
[Ref.: #43479]	trehalose ChEBI	+	builds acid from
[Ref.: #43479]	trehalose ChEBI	+	carbon source
[Ref.: #43479]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43479]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43479]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #43479]	chloramphenicol ChEBI	yes	50	µg (disc)
[Ref.: #43479]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43479]	erythromycin ChEBI				yes	15	µg
[Ref.: #43479]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43479]	penicillin ChEBI				yes	20	Unit
[Ref.: #43479]	polymyxin ChEBI				yes	50	µg
[Ref.: #43479]	rifampicin ChEBI	yes	30	µg (disc)
[Ref.: #43479]	streptomycin ChEBI				yes	10	µg
[Ref.: #43479]	tetracycline ChEBI				yes	30	µg
[Ref.: #43479]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43479]		hydrogen sulfide ChEBI	no
[Ref.: #43479]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43479]	acid phosphatase	+	3.1.3.2
[Ref.: #43479]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43479]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43479]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43479]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43479]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43479]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43479]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43479]	beta-galactosidase	+	3.2.1.23
[Ref.: #43479]	beta-galactosidase	-	3.2.1.23
[Ref.: #43479]	beta-glucosidase	-	3.2.1.21
[Ref.: #43479]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43479]	catalase	+	1.11.1.6
[Ref.: #43479]	cystine arylamidase	-	3.4.11.3
[Ref.: #43479]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43479]	esterase (C 4)	-
[Ref.: #43479]	esterase Lipase (C 8)	+
[Ref.: #43479]	leucine arylamidase	+	3.4.11.1
[Ref.: #43479]	lipase (C 14)	-
[Ref.: #43479]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43479]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43479]	trypsin	-	3.4.21.4
[Ref.: #43479]	urease	+	3.5.1.5
[Ref.: #43479]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42982]	Sample type/isolated from	seawater
[Ref.: #42982]	Geographic location (country and/or sea, region)	Bay of Banyuls (42° 29' N; 3° 8' E)
[Ref.: #42982]	Country	France
[Ref.: #42982]	Country ISO 3 Code	FRA
[Ref.: #42982]	Continent	Europe
[Ref.: #42982]	Geographic location	42.4833°/3.1333°

[Ref.: #43479]	Sample type/isolated from	coastal water sample from the north-western Mediterranean Sea
[Ref.: #43479]	Geographic location (country and/or sea, region)	Banyuls-sur-Mer
[Ref.: #43479]	Country	France
[Ref.: #43479]	Country ISO 3 Code	FRA
[Ref.: #43479]	Continent	Europe

[Ref.: #119365]	Sample type/isolated from	Environment, Sea water
[Ref.: #119365]	Geographic location (country and/or sea, region)	Banyuls sur mer
[Ref.: #119365]	Country	France
[Ref.: #119365]	Country ISO 3 Code	FRA
[Ref.: #119365]	Continent	Europe
[Ref.: #119365]	Isolation date	2004-02-24
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM990891 (>99% sequence identity) for Saonia flava subclade from Microbeatlas

Aquatic Samples	489
Soil Samples	31
Animal Samples	11
Plant Samples	11
Total Samples	542

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42982]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119365]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42982]	Flavobacteriaceae bacterium MOLA 117 partial 16S rRNA gene, culture collection MOLA:117	AM990891	1453	GenBank ENA	523696 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saonia flava DSM 29762	GCA_011927795	scaffold	GenBank ENA	523696 tax ID	*
[Ref.: #66792]	Saonia flava strain DSM 29762	523696.3	wgs	PATRIC	523696 tax ID	*
[Ref.: #66792]	Saonia flava DSM 29762	2830092112	draft	JGI IMG/M	523696 tax ID	*

[Ref.: #43479]	GC-content	36.9 mol%
[Ref.: #42982]	GC-content	36.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saonia flava DSM 29762 NCBI: GCA_011927795.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saonia flava DSM 29762 NCBI: GCA_011927795.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.083	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.725	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.306	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.775	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95.5	yes

Availability in culture collections External links

[Ref.: #42982]

Culture collection no.

DSM 29762, CIP 110873, MOLA 117

[Ref.: #96673]

SI-ID 402202

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saonia flava gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from coastal seawater.	Fagervold SK, Intertaglia L, Batailler N, Bondoso J, Lebaron P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002095	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42982

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29762

#43479

Sonja K. Fagervold, Laurent Intertaglia, Nicole Batailler, Joana Bondoso, Philippe Lebaron: Saonia flava gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from coastal seawater. IJSEM 67: 3246 - 3250 2017 ( DOI 10.1099/ijsem.0.002095 , PubMed 28829014 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96673

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402202.1 )

#119365 Collection of Institut Pasteur ; Curators of the CIP; CIP 110873
* These data were automatically processed and therefore are not curated

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