Name: Galliscardovia ingluviei RP51
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140312

Type strain:

Species: Galliscardovia ingluviei

Strain Designation: RP51

Culture col. no.: DSM 100235, CCM 8606, LMG 28778

Strain history: <- J. Killer, Inst. Animal Physiol. and Genetics, Czech Acad. Sci., Prague; RP51 <- R. Pechar

NCBI tax ID(s): 1769422 (species)

SI-ID 400241

DSM 100235

Special Collections

Section

Galliscardovia ingluviei RP51 is an anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from crop of a 13-month-old Hisex Brown hybrid laying hen Gallus gallus f. domestica.

colony-forming
Gram-positive
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Galliscardovia*
	Species	**Galliscardovia ingluviei**
	Full Scientific Name (LPSN)	Galliscardovia ingluviei Pechar et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43287]	Gram stain	positive

[Ref.: #43287]	Cell length	1.3-2.1 µm

[Ref.: #43287]	Cell width	0.4-0.6 µm

[Ref.: #43287]	Cell shape	rod-shaped

[Ref.: #43287]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.5

[Ref.: #43287]	Colony size	1.1-2.6 mm
[Ref.: #43287]	Colony color	creamy yellowish
[Ref.: #43287]	Colony shape	circular
[Ref.: #43287]	Incubation period	3 days
[Ref.: #43287]	Cultivation medium used	TPY agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43287]

Culture medium

TPY agar

[Ref.: #43287]

Culture medium growth

[Ref.: #42919]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #42919]

Culture medium growth

[Ref.: #42919]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42919]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42919]	growth	37 °C
[Ref.: #43287]	optimum	39 °C
[Ref.: #43287]	growth	15-49 °C

	pH	Kind of pH		pH
[Ref.: #43287]			optimum	6.5
[Ref.: #43287]			growth	4.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43287]	Oxygen tolerance	anaerobe
[Ref.: #43287]	Oxygen tolerance	microaerophile

[Ref.: #43287]	Type of spore	spore
[Ref.: #43287]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43287]	amygdalin ChEBI	+	fermentation
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	arbutin ChEBI	-	builds acid from
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	cellobiose ChEBI	+	fermentation
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-fructose ChEBI	+	fermentation
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-fucose ChEBI	-	builds acid from
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-galactose	-	fermentation
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-glucose ChEBI	+	fermentation
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-mannose ChEBI	-	builds acid from
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-ribose ChEBI	+	fermentation
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	D-xylose ChEBI	+	fermentation
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	erythritol ChEBI	-	builds acid from
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	esculin ChEBI	+	fermentation
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	galactitol ChEBI	-	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	gelatin ChEBI	-	hydrolysis
[Ref.: #43287]	gentiobiose ChEBI	+	fermentation
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	glycerol ChEBI	-	builds acid from
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	glycogen ChEBI	+	fermentation
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	inulin ChEBI	-	builds acid from
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	L-arabinose ChEBI	+	fermentation
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	L-fucose ChEBI	-	builds acid from
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	L-xylose ChEBI	-	builds acid from
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	lactose ChEBI	-	fermentation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	maltose ChEBI	+	fermentation
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	melezitose ChEBI	+	fermentation
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	melibiose ChEBI	+	fermentation
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	nitrate ChEBI	-	reduction
[Ref.: #43287]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43287]	raffinose ChEBI	+	fermentation
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	ribitol ChEBI	-	builds acid from
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43287]	salicin ChEBI	+	fermentation
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	starch ChEBI	+	fermentation
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	sucrose ChEBI	+	fermentation
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	trehalose ChEBI	+	fermentation
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	turanose ChEBI	+	fermentation
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43287]	xylitol ChEBI	-	builds acid from
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43287]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43287]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #43287]	acid phosphatase	-	3.1.3.2
[Ref.: #43287]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43287]	alpha-arabinosidase	+	3.2.1.55
[Ref.: #43287]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43287]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43287]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43287]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43287]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43287]	beta-galactosidase	+	3.2.1.23
[Ref.: #43287]	beta-glucosidase	+	3.2.1.21
[Ref.: #43287]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43287]	catalase	-	1.11.1.6
[Ref.: #43287]	cystine arylamidase	-	3.4.11.3
[Ref.: #43287]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43287]	esterase (C 4)	+
[Ref.: #43287]	esterase Lipase (C 8)	-
[Ref.: #43287]	fructose-6-phosphate phosphoketolase	+	4.1.2.22
[Ref.: #43287]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #43287]	glutamyl-glutamate arylamidase	-
[Ref.: #43287]	glycin arylamidase	+/-
[Ref.: #43287]	L-arginine arylamidase	+
[Ref.: #43287]	leucine arylamidase	+	3.4.11.1
[Ref.: #43287]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #43287]	leucyl glycin arylamidase	+/-	3.4.11.1
[Ref.: #43287]	lipase (C 14)	-
[Ref.: #43287]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43287]	phenylalanine arylamidase	+
[Ref.: #43287]	phenylalanine arylamidase	-
[Ref.: #43287]	proline-arylamidase	-	3.4.11.5
[Ref.: #43287]	pyroglutamic acid arylamidase	-
[Ref.: #43287]	serine arylamidase	+
[Ref.: #43287]	trypsin	-	3.4.21.4
[Ref.: #43287]	tyrosine arylamidase	+
[Ref.: #43287]	urease	-	3.5.1.5
[Ref.: #43287]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #42919]	14879	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42919]	Sample type/isolated from	crop of a 13-month-old Hisex Brown hybrid laying hen Gallus gallus f. domestica
[Ref.: #42919]	Host species	Gallus gallus f. domestica
[Ref.: #42919]	Geographic location (country and/or sea, region)	Central Bohemia, Prague
[Ref.: #42919]	Country	Czech Republic
[Ref.: #42919]	Country ISO 3 Code	CZE
[Ref.: #42919]	Continent	Europe

[Ref.: #43287]	Sample type/isolated from	sample from crop of a 13-month-old Hisex Brown hybrid laying hen
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT343146 (>99% sequence identity) for Galliscardovia ingluviei subclade from Microbeatlas

Aquatic Samples	340
Soil Samples	140
Animal Samples	12791
Plant Samples	60
Total Samples	13331

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42919]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43287]	Galliscardovia ingluviei strain RP51 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	KT343138	391	GenBank ENA	1769422 tax ID
[Ref.: #42919]	Galliscardovia ingluviei strain RP51 16S ribosomal RNA gene, partial sequence	KT343146	1444	GenBank ENA	1769422 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Galliscardovia ingluviei CCM 8606	GCA_014635685	contig	GenBank ENA	1769422 tax ID	*
[Ref.: #66792]	Galliscardovia ingluviei strain CCM 8606	1769422.3	wgs	PATRIC	1769422 tax ID	*

[Ref.: #43287]	GC-content	44.3 mol%
[Ref.: #42919]	GC-content	44.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Galliscardovia ingluviei strain CCM 8606 PATRIC: 1769422.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Galliscardovia ingluviei strain CCM 8606 PATRIC: 1769422.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.693	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	72.195	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.384	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.619	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.5	yes

Availability in culture collections External links

[Ref.: #42919]

Culture collection no.

DSM 100235, CCM 8606, LMG 28778

[Ref.: #96617]

SI-ID 400241

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Galliscardovia ingluviei gen. nov., sp. nov., a thermophilic bacterium of the family Bifidobacteriaceae isolated from the crop of a laying hen (Gallus gallus f. domestica).	Pechar R, Killer J, Svejstil R, Salmonova H, Geigerova M, Bunesova V, Rada V, Benada O	Int J Syst Evol Microbiol	10.1099/ijsem.0.001972	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42919

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100235

#43287

R. Pechar, J. Killer, R. vejstil, H. Salmonová, M. Geigerová, V. Buneová, V. Rada and O. Benada: Galliscardovia ingluviei gen. nov., sp. nov., a thermophilic bacterium of the family Bifidobacteriaceae isolated from the crop of a laying hen (Gallus gallus f. domestica). IJSEM 67: 2403 - 2411 2017 ( DOI 10.1099/ijsem.0.001972 , PubMed 28742007 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96617

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400241.1 )

* These data were automatically processed and therefore are not curated

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Galliscardovia ingluviei strain CCM 8606

Galliscardovia ingluviei strain CCM 8606

Change proposal

Change proposal