Name: Phaeovibrio sulfidiphilus JA480
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14026

Type strain:

Species: Phaeovibrio sulfidiphilus

Strain Designation: JA480

Culture col. no.: DSM 23193, KCTC 5825, NBRC 106163

Strain history: <- Ch Sasikala, Centre for Environment, IST, JNTU

NCBI tax ID(s): 643956 (strain), 1220600 (species)

Section

Phaeovibrio sulfidiphilus JA480 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from brackish water.

Gram-negative
motile
rod-shaped
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Phaeovibrio*
	Species	**Phaeovibrio sulfidiphilus**
	Full Scientific Name (LPSN)	Phaeovibrio sulfidiphilus Lakshmi et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29697]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #29697]	Cell length	1.85 µm

[Ref.: #29697]	Cell width	0.4 µm

[Ref.: #29697]	Cell shape	rod-shaped

[Ref.: #29697]	Motility	yes
[Ref.: #67771]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67771]			growth	30 °C

[Ref.: #67771]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29697]			optimum	7
[Ref.: #29697]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29697]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %93.543

[Ref.: #29697]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29697]		NaCl		growth	0.0-0.5	%
[Ref.: #29697]		NaCl		optimum	0.25	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29697]	acetate ChEBI	+	carbon source
[Ref.: #29697]	pyruvate ChEBI	+	carbon source
[Ref.: #29697]	succinate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16745]	Sample type/isolated from	brackish water
[Ref.: #16745]	Geographic location (country and/or sea, region)	Tamil Nadu, Nagapattinam district
[Ref.: #16745]	Country	India
[Ref.: #16745]	Country ISO 3 Code	IND
[Ref.: #16745]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From brackish water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Nagapattinam district, Tamilnadu
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Brackish

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16745]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16745]	Phaeovibrio sulfidiphilus NBRC 106163 partial 16S rRNA gene, type strain JA480T	FN391894	1450	ENA	643956 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phaeovibrio sulfidiphilus DSM 23193	GCA_014861485	contig	GenBank	1220600 tax ID	*
[Ref.: #66792]	Phaeovibrio sulfidiphilus strain DSM 23193	1220600.4	wgs	PATRIC	1220600 tax ID	*

[Ref.: #16745]	GC-content	67.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29697]	GC-content	68 mol%
[Ref.: #67771]	GC-content	67.8-68.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Phaeovibrio sulfidiphilus strain DSM 23193 PATRIC: 1220600.4
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phaeovibrio sulfidiphilus strain DSM 23193 PATRIC: 1220600.4
[Ref.: #69480]	motile	yes	77.907	no
[Ref.: #69480]	gram-positive	no	99.401	yes
[Ref.: #69480]	anaerobic	yes	96.128	yes
[Ref.: #69480]	aerobic	no	97.655	yes
[Ref.: #69480]	halophile	no	88.572	yes
[Ref.: #69480]	spore-forming	no	88.413	yes
[Ref.: #69480]	thermophile	yes	52.422	yes
[Ref.: #69480]	glucose-util	no	64.639	no
[Ref.: #69480]	flagellated	no	73.701	no
[Ref.: #69480]	glucose-ferment	no	79.472	no

Availability in culture collections External links

[Ref.: #16745]

Culture collection no.

DSM 23193, KCTC 5825, NBRC 106163

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phaeovibrio sulfidiphilus gen. nov., sp. nov., phototrophic alphaproteobacteria isolated from brackish water.	Lakshmi KVNS, Sasikala C, Ashok Kumar GV, Chandrasekaran R, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.018911-0	2010	*

References

#16745

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23193

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29697

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26081 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26081

IJSEM 828 2011 ( DOI 10.1099/ijs.0.018911-0 , PubMed 20495036 )

* These data were automatically processed and therefore are not curated

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Phaeovibrio sulfidiphilus strain DSM 23193

Phaeovibrio sulfidiphilus strain DSM 23193

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