Name: Fodinicurvata fenggangensis DSM 21160
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14023

Type strain:

Species: Fodinicurvata fenggangensis

Culture col. no.: DSM 21160, CCTCC AA 208037, YIM D812

Strain history: <- X.-L. Cui, The Key Laboratory for Microbial Resources of Ministry of Education; Yunnan Insitute of Microbiology

NCBI tax ID(s): 570967 (strain), 1121830 (species)

SI-ID 407525

DSM 21160

Section

Fodinicurvata fenggangensis DSM 21160 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from sediment from a salt mine.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodovibrionaceae*
	Genus	*Fodinicurvata*
	Species	**Fodinicurvata fenggangensis**
	Full Scientific Name (LPSN)	Fodinicurvata fenggangensis Wang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29243]	Gram stain	negative
[Ref.: #25663]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #29243]	Cell length	1.3 µm
[Ref.: #25663]	Cell length	0.5-1.3 µm

[Ref.: #29243]	Cell width	0.35 µm
[Ref.: #25663]	Cell width	0.2-0.4 µm

[Ref.: #29243]	Cell shape	rod-shaped
[Ref.: #25663]	Cell shape	vibrio-shaped

[Ref.: #29243]	Motility	no
[Ref.: #25663]	Motility	no

[Ref.: #25663]

Colony color

cream-white

[Ref.: #29243]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15572]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15572]

Culture medium growth

[Ref.: #15572]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15572]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15572]	growth	28 °C
[Ref.: #25663]	optimum	28 °C
[Ref.: #25663]	growth	15-42 °C
[Ref.: #29243]	growth	15-42 °C
[Ref.: #29243]	optimum	28 °C

[Ref.: #15572]	Temperature range	mesophilic
[Ref.: #25663]	Temperature range	mesophilic
[Ref.: #29243]	Temperature range	mesophilic

		pH
[Ref.: #29243]	optimum	7.5
[Ref.: #25663]	optimum	7.5
[Ref.: #29243]	growth	6.5-8.5
[Ref.: #25663]	growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29243]

Oxygen tolerance

facultative anaerobe

[Ref.: #25663]	Type of spore	endospore
[Ref.: #25663]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #15572]

Name of produced compound

poly-ß-hydroxybutyrate

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29243]		NaCl		growth	1.5-20	%
[Ref.: #25663]		NaCl		growth	1.5-20	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25663]	acetate ChEBI	+	carbon source
[Ref.: #25663]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #29243]	asparagine ChEBI	+	carbon source
[Ref.: #29243]	aspartate ChEBI	+	carbon source
[Ref.: #25663]	beta-cyclodextrin ChEBI	-	carbon source
[Ref.: #25663]	cellulose ChEBI	-	carbon source
[Ref.: #29243]	citrate ChEBI	+	carbon source
[Ref.: #25663]	citrate ChEBI	+	carbon source
[Ref.: #25663]	D-galactose ChEBI	-	carbon source
[Ref.: #25663]	D-glucose ChEBI	+	carbon source
[Ref.: #25663]	D-mannitol ChEBI	+	carbon source
[Ref.: #25663]	D-mannose ChEBI	-	carbon source
[Ref.: #25663]	D-ribose ChEBI	-	carbon source
[Ref.: #25663]	D-serine ChEBI	-	carbon source
[Ref.: #25663]	D-sorbitol ChEBI	+	carbon source
[Ref.: #25663]	D-xylose ChEBI	+	carbon source
[Ref.: #25663]	esculin ChEBI	-	hydrolysis
[Ref.: #25663]	ethanol ChEBI	+	carbon source
[Ref.: #25663]	gamma-cyclodextrin ChEBI	-	carbon source
[Ref.: #25663]	gelatin ChEBI	-	hydrolysis
[Ref.: #29243]	glucose ChEBI	+	carbon source
[Ref.: #25663]	glucose ChEBI	-	builds acid from
[Ref.: #29243]	glutamate ChEBI	+	carbon source
[Ref.: #29243]	glycerol ChEBI	+	carbon source
[Ref.: #25663]	glycerol ChEBI	+	carbon source
[Ref.: #25663]	glycine ChEBI	-	carbon source
[Ref.: #25663]	histidine ChEBI	-	carbon source
[Ref.: #25663]	L-arabinose ChEBI	+	carbon source
[Ref.: #25663]	L-asparagine ChEBI	+	carbon source
[Ref.: #25663]	L-aspartate ChEBI	+	carbon source
[Ref.: #25663]	L-fructose ChEBI	-	carbon source
[Ref.: #25663]	L-glutamate ChEBI	+	carbon source
[Ref.: #25663]	L-ornithine ChEBI	-	carbon source
[Ref.: #25663]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #25663]	L-proline ChEBI	+	carbon source
[Ref.: #25663]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25663]	lactose ChEBI	-	carbon source
[Ref.: #29243]	maltose ChEBI	+	carbon source
[Ref.: #25663]	maltose ChEBI	+	carbon source
[Ref.: #25663]	melibiose ChEBI	-	carbon source
[Ref.: #25663]	methanol ChEBI	-	carbon source
[Ref.: #29243]	myo-inositol ChEBI	+	carbon source
[Ref.: #25663]	myo-inositol ChEBI	-	carbon source
[Ref.: #29243]	nitrate ChEBI	+	reduction
[Ref.: #29243]	proline ChEBI	+	carbon source
[Ref.: #25663]	raffinose ChEBI	-	carbon source
[Ref.: #25663]	ribitol ChEBI	-	carbon source
[Ref.: #25663]	starch ChEBI	-	carbon source
[Ref.: #25663]	sucrose ChEBI	+	carbon source
[Ref.: #25663]	trehalose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #25663]	amikacin ChEBI				yes	30	µg (disc)
[Ref.: #25663]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #25663]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #25663]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #25663]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #25663]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #25663]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #25663]	norfloxacin ChEBI				yes	10	µg (disc)
[Ref.: #25663]	penicillin ChEBI	yes	10	Unit
[Ref.: #25663]	streptomycin ChEBI				yes	10	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #25663]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25663]	acid phosphatase	-	3.1.3.2
[Ref.: #29243]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25663]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25663]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #25663]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25663]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25663]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25663]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25663]	arginine dihydrolase	+	3.5.3.6
[Ref.: #25663]	beta-galactosidase	-	3.2.1.23
[Ref.: #25663]	beta-glucosidase	-	3.2.1.21
[Ref.: #25663]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25663]	cystine arylamidase	+	3.4.11.3
[Ref.: #29243]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25663]	esterase (C 4)	+
[Ref.: #25663]	esterase Lipase (C 8)	+
[Ref.: #29243]	gelatinase	+
[Ref.: #25663]	leucine arylamidase	+	3.4.11.1
[Ref.: #25663]	lipase (C 14)	+
[Ref.: #25663]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25663]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #25663]	nitrate reductase	+	1.7.99.4
[Ref.: #25663]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #25663]	trypsin	+	3.4.21.4
[Ref.: #29243]	urease	+	3.5.1.5
[Ref.: #25663]	urease	+	3.5.1.5
[Ref.: #25663]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15572]	Sample type/isolated from	sediment from a salt mine
[Ref.: #15572]	Geographic location (country and/or sea, region)	Yunnan province, Fenggang
[Ref.: #15572]	Country	China
[Ref.: #15572]	Country ISO 3 Code	CHN
[Ref.: #15572]	Continent	Asia

[Ref.: #25663]	Sample type/isolated from	salt mine of Fenggang in Yunnan
[Ref.: #25663]	Geographic location (country and/or sea, region)	South-West China
[Ref.: #25663]	Country	China
[Ref.: #25663]	Country ISO 3 Code	CHN
[Ref.: #25663]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Condition	#Saline	-
#Environmental	#Terrestrial	#Sediment
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ357427 (>99% sequence identity) for Fodinicurvata fenggangensis from Microbeatlas

Aquatic Samples	200
Soil Samples	123
Animal Samples	45
Plant Samples	6
Total Samples	374

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15572]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15572]	Rhodospirillaceae bacterium YIM D812 16S ribosomal RNA gene, partial sequence	FJ357427	1389	ENA	1121830 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fodinicurvata fenggangensis DSM 21160	GCA_000686045	contig	GenBank	570967 tax ID	*
[Ref.: #66792]	Fodinicurvata fenggangensis DSM 21160	570967.3	wgs	PATRIC	570967 tax ID	*
[Ref.: #66792]	Fodinicurvata fenggangensis DSM 21160	2563366728	draft	JGI IMG/M	570967 tax ID	*

[Ref.: #15572]	GC-content	62.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29243]	GC-content	62.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fodinicurvata fenggangensis DSM 21160 PATRIC: 570967.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fodinicurvata fenggangensis DSM 21160 PATRIC: 570967.3
[Ref.: #69480]	gram-positive	no	98.2	no
[Ref.: #69480]	anaerobic	no	96.114	no
[Ref.: #69480]	halophile	yes	64.675	no
[Ref.: #69480]	spore-forming	no	91.658	no
[Ref.: #69480]	glucose-util	yes	78.783	no
[Ref.: #69480]	thermophile	no	90.798	no
[Ref.: #69480]	flagellated	no	80.345	yes
[Ref.: #69480]	aerobic	yes	77.07	no
[Ref.: #69480]	motile	yes	57.809	yes
[Ref.: #69480]	glucose-ferment	no	88.361	no

Availability in culture collections External links

[Ref.: #15572]

Culture collection no.

DSM 21160, CCTCC AA 208037, YIM D812

[Ref.: #83191]

SI-ID 407525

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fodinicurvata halophila sp. nov., a moderately halophilic bacterium from a marine saltern.	Infante-Dominguez C, Lawson PA, Johnson CN, Sanchez-Porro C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.000010	2014	*
Phylogeny	Fodinicurvata sediminis gen. nov., sp. nov. and Fodinicurvata fenggangensis sp. nov., poly-beta-hydroxybutyrate-producing bacteria in the family Rhodospirillaceae.	Wang YX, Liu JH, Zhang XX, Chen YG, Wang ZG, Chen Y, Li QY, Peng Q, Cui XL	Int J Syst Evol Microbiol	10.1099/ijs.0.009340-0	2009	*

References

#15572

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21160

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25663

IJSEM 2575 2009 ( DOI 10.1099/ijs.0.009340-0 , PubMed 19622654 )

#29243

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25663 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83191

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407525.1 )

#25663

IJSEM 2575 2009 ( DOI 10.1099/ijs.0.009340-0 , PubMed 19622654 )

* These data were automatically processed and therefore are not curated

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