Name: Empedobacter stercoris 990B6_12ER2A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140107

Type strain:

Species: Empedobacter stercoris

Strain Designation: 990B6_12ER2A, 990 B6_12 E-R2A

Culture col. no.: DSM 29458, CIP 110833, LMG 28501

Strain history: CIP <- 2014, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 990 B6_12 E-R2A

NCBI tax ID(s): 1628248 (species)

SI-ID 400294

DSM 29458, CIP 110833

Other strains from Empedobacter stercoris

E. stercoris CCUG 25003 A
E. stercoris CCUG 25003 B

Section

Empedobacter stercoris 990B6_12ER2A is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from biogas plant input sample.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Empedobacter*
	Species	**Empedobacter stercoris**
	Full Scientific Name (LPSN)	Empedobacter stercoris Schauss et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #123315]	Gram stain	negative

[Ref.: #123315]	Cell shape	rod-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42714]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #42714]

Culture medium growth

[Ref.: #42714]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42714]

Culture medium composition

expand / minimize

[Ref.: #123315]

Culture medium

CIP Medium 328

[Ref.: #123315]

Culture medium growth

[Ref.: #123315]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #42714]			growth	28 °C

[Ref.: #42714]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42714]	Sample type/isolated from	biogas plant input sample
[Ref.: #42714]	Geographic location (country and/or sea, region)	Hessen
[Ref.: #42714]	Country	Germany
[Ref.: #42714]	Country ISO 3 Code	DEU
[Ref.: #42714]	Continent	Europe

[Ref.: #123315]	Sample type/isolated from	Biogas plant input sample
[Ref.: #123315]	Geographic location (country and/or sea, region)	Hessen
[Ref.: #123315]	Country	Germany
[Ref.: #123315]	Country ISO 3 Code	DEU
[Ref.: #123315]	Continent	Europe
[Ref.: #123315]	Isolation date	2012-01-02
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Plant (Factory)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42714]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123315]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42714]	Empedobacter stercoris strain 990B6_12ER2A 16S ribosomal RNA gene, partial sequence	KP119859	1424	ENA	1628248 tax ID

Availability in culture collections External links

[Ref.: #42714]

Culture collection no.

DSM 29458, CIP 110833, LMG 28501

[Ref.: #96514]

SI-ID 400294

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Empedobacter stercoris sp. nov., isolated from an input sample of a biogas plant.	Schauss T, Busse HJ, Golke J, Kampfer P, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000486	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42714

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29458

#96514

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400294.1 )

#123315 Collection of Institut Pasteur ; Curators of the CIP; CIP 110833
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Empedobacter stercoris in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF