Name: Photobacterium piscicola BN05-26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140084

Type strain:

Species: Photobacterium piscicola

Strain Designation: BN05-26, W3

Culture col. no.: DSM 106738, LMG 19543, NCCB 100098

Strain history: <- NCCB <- L. Robertson, TU Delft, Netherlands

NCBI tax ID(s): 1378299 (species)

SI-ID 379477

NCCB 100098, LMG 27681

Section

Photobacterium piscicola BN05-26 is a psychrophilic, motile bacterium that was isolated from mucus from the skin of whiting Merlangius merlangius.

motile
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium piscicola**
	Full Scientific Name (LPSN)	Photobacterium piscicola Figge et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #69480]	Motility	yes Confidence in %97.867

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #42691]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42691]			growth	20 °C

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Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #42691]	24672	+	-	+	+	-	-	-	-	+	-	+	-	+	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42691]	Sample type/isolated from	mucus from the skin of whiting Merlangius merlangius
[Ref.: #42691]	Host species	Merlangius merlangius
[Ref.: #42691]	Geographic location (country and/or sea, region)	North Sea
[Ref.: #42691]	Country	Netherlands
[Ref.: #42691]	Country ISO 3 Code	NLD
[Ref.: #42691]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

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Global distribution of 16S sequence KC951111 (>99% sequence identity) for Photobacterium from Microbeatlas

Aquatic Samples	2884
Soil Samples	73
Animal Samples	2251
Plant Samples	55
Total Samples	5263

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42691]	Photobacterium sp. NCCB 100098 16S ribosomal RNA gene, complete sequence	KC951111	1443	ENA	1378299 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photobacterium piscicola NCCB 100098T	GCA_900166965	scaffold	GenBank	1378299 tax ID	*
[Ref.: #66792]	Photobacterium piscicola strain type strain: NCCB 100098	1378299.3	wgs	PATRIC	1378299 tax ID	*
[Ref.: #66792]	Photobacterium piscicola NCCB 100098	2834626906	draft	JGI IMG/M	1378299 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Photobacterium piscicola type strain: NCCB 100098 NCBI: GCA_900166965.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photobacterium piscicola type strain: NCCB 100098 NCBI: GCA_900166965.1
[Ref.: #69480]	motile	yes	91.265	no
[Ref.: #69480]	flagellated	yes	85.506	no
[Ref.: #69480]	gram-positive	no	98.789	no
[Ref.: #69480]	anaerobic	no	97.7	no
[Ref.: #69480]	aerobic	yes	68.813	no
[Ref.: #69480]	halophile	no	62.379	no
[Ref.: #69480]	spore-forming	no	95.647	no
[Ref.: #69480]	thermophile	no	98.896	yes
[Ref.: #69480]	glucose-util	yes	88.817	no
[Ref.: #69480]	glucose-ferment	yes	86.148	yes

Availability in culture collections External links

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Culture collection no.

DSM 106738, LMG 19543, NCCB 100098

[Ref.: #96497]

SI-ID 379477

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium piscicola sp. nov., isolated from marine fish and spoiled packed cod.	Figge MJ, Cleenwerck I, van Uijen A, De Vos P, Huys G, Robertson L	Syst Appl Microbiol	10.1016/j.syapm.2014.05.003	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42691

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106738

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96497

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379477.1 )

* These data were automatically processed and therefore are not curated

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Photobacterium piscicola type strain: NCCB 100098

Photobacterium piscicola type strain: NCCB 100098

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