Rheinheimera nanhaiensis (DSM 22401, CCTCC AB 209089, KACC 14030)

Name: Rheinheimera nanhaiensis (DSM 22401, CCTCC AB 209089, KACC 14030)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140034

Type strain

Strain Designation E407-8, E407.8

Culture col. no. DSM 22401 CCTCC AB 209089 KACC 14030 E407-8 CCTCC AB 20908 1 more

NCBI tax ID(s) 1163621

Special Collections DSMZ Literature strains

History DSMZ <- Y.-Z. Zhang, Shandong Univ., Jinan, China; E407.8 <- X.-Y. Zhang and H.-J. Li <- M.-Y. Zhou and H.-Y. Dang

Links

Rheinheimera nanhaiensis E407-8 is a facultative aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative motile rod-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398918

DSM 22401

@ref 20215

Last LPSN update 2026-05-29 08:39:37

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Chromatiaceae

Genus Rheinheimera

Species Rheinheimera nanhaiensis

Full scientific name Rheinheimera nanhaiensis Li et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29710	negative	1.5 µm	0.4 µm	rod-shaped
125438	negative				99.5
125439	negative				98.849

Pigmentation

29710

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42641	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
29710	positive	growth	10-48
29710	positive	optimum	37
42641	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
29710	positive	optimum	8
29710	positive	growth	5.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29710	facultative aerobe
125439	aerobe	96.997

Spore formation

@ref	Spore formation	Confidence
125439		99.694

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29710	NaCl	positive	growth	0-8 %
29710	NaCl	positive	optimum	1.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29710	17057 ChEBI	cellobiose	+	carbon source
29710	4853 ChEBI	esculin	+	hydrolysis
29710	5291 ChEBI	gelatin	+	carbon source
29710	17234 ChEBI	glucose	+	carbon source
29710	17306 ChEBI	maltose	+	carbon source
29710	506227 ChEBI	N-acetylglucosamine	+	carbon source
29710	17632 ChEBI	nitrate	+	reduction
29710	17992 ChEBI	sucrose	+	carbon source
29710	27082 ChEBI	trehalose	+	carbon source
29710	53423 ChEBI	tween 40	+	carbon source
29710	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29710	acid phosphatase	+	3.1.3.2
29710	alkaline phosphatase	+	3.1.3.1
29710	catalase	+	1.11.1.6
29710	cytochrome oxidase	+	1.9.3.1
29710	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
29710	marine sediment
42641	marine sediments	South China Sea, E112°0.017', N18°29.810'	China	CHN	Asia	18.4968	112 18.4968/112

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42641	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM29669v1 assembly for Rheinheimera nanhaiensis E407-8	contig	GCA_000296695	562729.3	2531839457	562729	68.15

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42641	Rheinheimera nanhaiensis E407-8 16S ribosomal RNA gene, partial sequence	FJ169968	1491		562729

GC content

29710

GC-content (mol%)51

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM29669v1 assembly for Rheinheimera nanhaiensis E407-8
NCBI: GCA_000296695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.00	no
125439	gram_stain	BacteriaNetⓘ	negative	98.85	no
125439	motility	BacteriaNetⓘ	yes	81.21	no
125439	spore_formation	BacteriaNetⓘ	no	99.69	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rheinheimera nanhaiensis E407-8
PATRIC: 562729.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	yes
125438	anaerobic	anaerobicⓘ	no	95.06	yes
125438	spore-forming	spore-formingⓘ	no	87.11	no
125438	aerobic	aerobicⓘ	yes	66.42	yes
125438	thermophilic	thermophileⓘ	no	98.41	yes
125438	flagellated	motile2+ⓘ	yes	88.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the protease-producing bacterium Rheinheimera nanhaiensis E407-8T, isolated from deep-sea sediment of the South China Sea.	Zhang XY, Zhang YJ, Qin QL, Xie BB, Chen XL, Zhou BC, Zhang YZ	J Bacteriol	10.1128/JB.01922-12	2012
Phylogeny	Rheinheimera japonica sp. nov., a novel bacterium with antimicrobial activity from seashore sediments of the Sea of Japan.	Romanenko LA, Tanaka N, Svetashev VI, Kalinovskaya NI, Mikhailov VV	Arch Microbiol	10.1007/s00203-015-1095-2	2015
Phylogeny	Rheinheimera hassiensis sp. nov. and Rheinheimera muenzenbergensis sp. nov., two species from the rhizosphere of Hordeum secalinum.	Suarez C, Ratering S, Geissler-Plaum R, Schnell S	Int J Syst Evol Microbiol	10.1099/ijs.0.061200-0	2014
Phylogeny	Rheinheimera nanhaiensis sp. nov., isolated from marine sediments, and emended description of the genus Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007.	Li HJ, Zhang XY, Zhang YJ, Zhou MY, Gao ZM, Chen XL, Dang HY, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.019281-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26093	IJSEM 1016 2011 ( DOI 10.1099/ijs.0.019281-0 , PubMed 20511463 )
#29710	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26093
#42641	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22401
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Rheinheimera nanhaiensis (DSM 22401, CCTCC AB 209089, KACC 14030)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000296695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media