Name: Rheinheimera nanhaiensis E407-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140034

Type strain:

Species: Rheinheimera nanhaiensis

Strain Designation: E407-8, E407.8

Culture col. no.: DSM 22401, CCTCC AB 209089, KACC 14030, CCTCC AB 20908

Strain history: <- Y.-Z. Zhang, Shandong Univ., Jinan, China; E407.8 <- X.-Y. Zhang and H.-J. Li <- M.-Y. Zhou and H.-Y. Dang

NCBI tax ID(s): 1163621 (species)

SI-ID 398918

DSM 22401

Other strains from Rheinheimera nanhaiensis

R. nanhaiensis

Section

Rheinheimera nanhaiensis E407-8 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Chromatiaceae*
	Genus	*Rheinheimera*
	Species	**Rheinheimera nanhaiensis**
	Full Scientific Name (LPSN)	Rheinheimera nanhaiensis Li et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29710]	Gram stain	negative

[Ref.: #29710]	Cell length	1.5 µm

[Ref.: #29710]	Cell width	0.4 µm

[Ref.: #29710]	Cell shape	rod-shaped

[Ref.: #29710]	Motility	yes

[Ref.: #29710]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42641]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42641]

Culture medium growth

[Ref.: #42641]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42641]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #29710]	growth	10-48 °C
[Ref.: #29710]	optimum	37 °C
[Ref.: #42641]	growth	37 °C

[Ref.: #42641]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29710]			optimum	8
[Ref.: #29710]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29710]

Oxygen tolerance

facultative aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29710]		NaCl		growth	0-8	%
[Ref.: #29710]		NaCl		optimum	1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29710]	cellobiose ChEBI	+	carbon source
[Ref.: #29710]	esculin ChEBI	+	hydrolysis
[Ref.: #29710]	gelatin ChEBI	+	carbon source
[Ref.: #29710]	glucose ChEBI	+	carbon source
[Ref.: #29710]	maltose ChEBI	+	carbon source
[Ref.: #29710]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29710]	nitrate ChEBI	+	reduction
[Ref.: #29710]	sucrose ChEBI	+	carbon source
[Ref.: #29710]	trehalose ChEBI	+	carbon source
[Ref.: #29710]	tween 40 ChEBI	+	carbon source
[Ref.: #29710]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29710]	acid phosphatase	+	3.1.3.2
[Ref.: #29710]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29710]	catalase	+	1.11.1.6
[Ref.: #29710]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29710]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29710]	Sample type/isolated from	marine sediment

[Ref.: #42641]	Sample type/isolated from	marine sediments
[Ref.: #42641]	Geographic location (country and/or sea, region)	South China Sea, E112°0.017', N18°29.810'
[Ref.: #42641]	Country	China
[Ref.: #42641]	Country ISO 3 Code	CHN
[Ref.: #42641]	Continent	Asia
[Ref.: #42641]	Geographic location	18.4968°/112.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42641]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42641]	Rheinheimera nanhaiensis E407-8 16S ribosomal RNA gene, partial sequence	FJ169968	1491	ENA	562729 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rheinheimera nanhaiensis E407-8	GCA_000296695	contig	GenBank	562729 tax ID	*
[Ref.: #66792]	Rheinheimera nanhaiensis E407-8	562729.3	wgs	PATRIC	562729 tax ID	*
[Ref.: #66792]	Rheinheimera nanhaiensis E407-8	2531839457	draft	JGI IMG/M	562729 tax ID	*

[Ref.: #29710]

GC-content

51 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rheinheimera nanhaiensis E407-8 PATRIC: 562729.3
[Ref.: #69480]	gram-positive	no	99.017	no
[Ref.: #69480]	anaerobic	no	96.704	yes
[Ref.: #69480]	halophile	no	84.089	no
[Ref.: #69480]	spore-forming	no	94.61	no
[Ref.: #69480]	glucose-util	yes	91.353	yes
[Ref.: #69480]	thermophile	no	99.35	yes
[Ref.: #69480]	flagellated	yes	81.761	no
[Ref.: #69480]	motile	yes	91.632	yes
[Ref.: #69480]	aerobic	yes	80.539	yes
[Ref.: #69480]	glucose-ferment	no	76.294	no

Availability in culture collections External links

[Ref.: #42641]

Culture collection no.

DSM 22401, CCTCC AB 209089, KACC 14030, CCTCC AB 20908

[Ref.: #96456]

SI-ID 398918

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rheinheimera japonica sp. nov., a novel bacterium with antimicrobial activity from seashore sediments of the Sea of Japan.	Romanenko LA, Tanaka N, Svetashev VI, Kalinovskaya NI, Mikhailov VV	Arch Microbiol	10.1007/s00203-015-1095-2	2015	*
Phylogeny	Rheinheimera hassiensis sp. nov. and Rheinheimera muenzenbergensis sp. nov., two species from the rhizosphere of Hordeum secalinum.	Suarez C, Ratering S, Geissler-Plaum R, Schnell S	Int J Syst Evol Microbiol	10.1099/ijs.0.061200-0	2014	*
Phylogeny	Rheinheimera nanhaiensis sp. nov., isolated from marine sediments, and emended description of the genus Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007.	Li HJ, Zhang XY, Zhang YJ, Zhou MY, Gao ZM, Chen XL, Dang HY, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.019281-0	2010	*
Genetics	Genome sequence of the protease-producing bacterium Rheinheimera nanhaiensis E407-8T, isolated from deep-sea sediment of the South China Sea.	Zhang XY, Zhang YJ, Qin QL, Xie BB, Chen XL, Zhou BC, Zhang YZ	J Bacteriol	10.1128/JB.01922-12	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29710

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26093 (see below)

#42641

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22401

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96456

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398918.1 )

#26093

IJSEM 1016 2011 ( DOI 10.1099/ijs.0.019281-0 , PubMed 20511463 )

* These data were automatically processed and therefore are not curated

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