Name: Acidovorax carolinensis NA3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 139835

Type strain:

Species: Acidovorax carolinensis

Strain Designation: NA3

Culture col. no.: DSM 105008

Strain history: <- D. Singleton, Univ. North Carolina at Chapel Hill, USA; NA3

NCBI tax ID(s): 553814 (species)

SI-ID 404151

DSM 105008

Special Collections

DSMZ

Section

Acidovorax carolinensis NA3 is a Gram-negative bacterium that was isolated from contaminated soil.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Acidovorax*
	Species	**Acidovorax carolinensis**
	Full Scientific Name (LPSN)	Acidovorax carolinensis Singleton et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42443]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #42443]

Culture medium growth

[Ref.: #42443]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42443]

Culture medium composition

expand / minimize

[Ref.: #42443]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #42443]

Culture medium growth

[Ref.: #42443]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42443]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42443]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42443]	Sample type/isolated from	contaminated soil
[Ref.: #42443]	Geographic location (country and/or sea, region)	North Carolina, Chapel Hill, Charlotte
[Ref.: #42443]	Country	USA
[Ref.: #42443]	Country ISO 3 Code	USA
[Ref.: #42443]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU910093 (>99% sequence identity) for Acidovorax from Microbeatlas

Aquatic Samples	28
Soil Samples	3
Animal Samples	4
Plant Samples	4
Total Samples	39

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42443]	Acidovorax sp. NA3 16S ribosomal RNA gene, partial sequence	EU910093	1497	GenBank ENA	553814 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidovorax carolinensis NA3	GCA_002157145	complete	GenBank ENA	553814 tax ID	*
[Ref.: #66792]	Acidovorax carolinensis NA3	2808606526	complete	JGI IMG/M	553814 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidovorax carolinensis NA3 NCBI: GCA_002157145.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.46	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.703	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.138	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.897	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.162	no

Availability in culture collections External links

[Ref.: #42443]

Culture collection no.

DSM 105008

[Ref.: #96276]

SI-ID 404151

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polyphasic characterization of four soil-derived phenanthrene-degrading Acidovorax strains and proposal of Acidovorax carolinensis sp. nov.	Singleton DR, Lee J, Dickey AN, Stroud A, Scholl EH, Wright FA, Aitken MD	Syst Appl Microbiol	10.1016/j.syapm.2018.06.001	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42443

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105008

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96276

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404151.1 )

* These data were automatically processed and therefore are not curated

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