Name: Prolinoborus fasciculus XI
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 138802

Type strain:

Species: Prolinoborus fasciculus

Strain Designation: XI

Culture col. no.: CIP 103579, ATCC 27740, LMG 6233, CCUG 64017

Strain history: CIP <- 1993, ATCC, Aquaspirillum fasciculus <- N. Krieg: strain XI

NCBI tax ID(s): 1056810 (species)

SI-ID 3865

LMG 6233, ATCC 27740, LMG 12892, CIP 103579, CCUG 64017

Special Collections

CCUG
CIP

Section

Prolinoborus fasciculus XI is a Gram-negative bacterium of the family Chromobacteriaceae.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Prolinoborus*
	Species	**Prolinoborus fasciculus**
	Full Scientific Name (LPSN)	Prolinoborus fasciculus (Strength et al. 1976) Pot et al. 1992

Synonym

Aquaspirillum fasciculus

Information on morphological and physiological properties Morphology

[Ref.: #40720]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99

[Ref.: #40720]	Cell shape	coccus-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #40720]

Culture medium

MEDIUM 65 - for Prolinoborus fasciculus

[Ref.: #40720]

Culture medium growth

[Ref.: #40720]

Culture medium composition

expand / minimize

[Ref.: #40720]

Culture medium

CIP Medium 65

[Ref.: #40720]

Culture medium growth

[Ref.: #40720]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #40720]

Culture medium

CIP Medium 72

[Ref.: #40720]

Culture medium growth

[Ref.: #40720]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #40720]		growth	30 °C
[Ref.: #40720]		growth	10-22 °C
[Ref.: #40720]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.598

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.653
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #40720]		esculin ChEBI	-	hydrolysis
[Ref.: #40720]		hippurate ChEBI	-	hydrolysis

	Metabolite production	Metabolite	Production
[Ref.: #40720]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #40720]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #40720]	caseinase	-	3.4.21.50
[Ref.: #40720]	catalase	+	1.11.1.6
[Ref.: #40720]	DNase	-
[Ref.: #40720]	gelatinase	-
[Ref.: #40720]	oxidase	-
[Ref.: #40720]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #40720]	Sample type/isolated from	Environment, Pond water
[Ref.: #40720]	Geographic location (country and/or sea, region)	Blacksburg, Virginia
[Ref.: #40720]	Country	United States of America
[Ref.: #40720]	Country ISO 3 Code	USA
[Ref.: #40720]	Continent	North America
[Ref.: #40720]	Isolation date	1969

[Ref.: #40720]	Geographic location (country and/or sea, region)	Blacksburg, VA
[Ref.: #40720]	Country	USA
[Ref.: #40720]	Country ISO 3 Code	USA
[Ref.: #40720]	Continent	North America
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #40720]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Prolinoborus fasciculus strain CIP 103579 16S ribosomal RNA gene, complete sequence.	JN175353	1413	GenBank ENA	1056810 tax ID	*
[Ref.: #124043]	Prolinoborus fasciculus strain CIP 103579 16S ribosomal RNA gene, partial sequence.	OQ619106	1363	GenBank ENA	1056810 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Prolinoborus fasciculus strain type strain: CIP 103579 strain CIP 103579T	1056810.3	wgs	PATRIC	1056810 tax ID	*
[Ref.: #66792]	Prolinoborus fasciculus CIP 103579	2831754677	draft	JGI IMG/M	1056810 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prolinoborus fasciculus strain type strain: CIP 103579 strain CIP 103579T PATRIC: 1056810.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prolinoborus fasciculus strain type strain: CIP 103579 strain CIP 103579T PATRIC: 1056810.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.82	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.653	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.598	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.975	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	79.054	no

Availability in culture collections External links

[Ref.: #40720]

Culture collection no.

CIP 103579, ATCC 27740, LMG 6233, CCUG 64017

[Ref.: #95449]

SI-ID 3865

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The status of the genus Prolinoborus (Pot et al. 1992) and the species Prolinoborus fasciculus (Pot et al. 1992).	Glaeser SP, Pulami D, Blom J, Eisenberg T, Goesmann A, Bender J, Wilharm G, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004404	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40720 Collection of Institut Pasteur ; Curators of the CIP; CIP 103579

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#95449

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3865.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Prolinoborus fasciculus strain type strain: CIP 103579 strain CIP 103579T

Prolinoborus fasciculus strain type strain: CIP 103579 strain CIP 103579T

Change proposal

Change proposal