Strain identifier

BacDive ID: 138802

Type strain: Yes

Species: Prolinoborus fasciculus

Strain Designation: XI

Strain history: CIP <- 1993, ATCC, Aquaspirillum fasciculus <- N. Krieg: strain XI

NCBI tax ID(s): 1056810 (species)

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General

@ref: 40720

BacDive-ID: 138802

keywords: genome sequence, Bacteria, mesophilic

description: Prolinoborus fasciculus XI is a mesophilic bacterium of the family Chromobacteriaceae.

NCBI tax id

  • NCBI tax id: 1056810
  • Matching level: species

strain history

  • @ref: 40720
  • history: CIP <- 1993, ATCC, Aquaspirillum fasciculus <- N. Krieg: strain XI

doi: 10.13145/bacdive138802.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Chromobacteriaceae
  • genus: Prolinoborus
  • species: Prolinoborus fasciculus
  • full scientific name: Prolinoborus fasciculus (Strength et al. 1976) Pot et al. 1992

  • synonyms

    • @ref: 20215
    • synonym: Aquaspirillum fasciculus

@ref: 40720

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Neisseriaceae

genus: Prolinoborus

species: Prolinoborus fasciculus

strain designation: XI

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no94.825
6948099.963negative
40720negativecoccus-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40720MEDIUM 65 - for Prolinoborus fasciculusyesDistilled water make up to (1000.000 ml);Manganese II sulphate monohydrate(2.000 mg);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Ammonium sulphate (1.000 g);Peptone (10.000 g);Succinic acid (1.680 g);Ferric III chloride hexahydrate (2.000mg)
40720CIP Medium 65yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=65
40720CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
40720positivegrowth30mesophilic
40720positivegrowth10-22psychrophilic
40720nogrowth41thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.996

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
407204853esculin-hydrolysis
40720606565hippurate-hydrolysis

metabolite production

  • @ref: 40720
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 40720
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
40720oxidase-
40720gelatinase-
40720DNase-
40720caseinase-3.4.21.50
40720catalase+1.11.1.6
40720urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
40720Blacksburg, VAUSAUSANorth America
40720Blacksburg, VirginiaUnited States of AmericaUSANorth AmericaEnvironment, Pond water1969

Safety information

risk assessment

  • @ref: 40720
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Prolinoborus fasciculus strain type strain: CIP 103579 strain CIP 103579T1056810.3wgspatric1056810
66792Prolinoborus fasciculus CIP 1035792831754677draftimg1056810

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.657no
flagellatedno95.117no
gram-positiveno97.572no
anaerobicno98.805no
aerobicyes92.429no
halophileno78.505no
spore-formingno96.712no
thermophileno99.892yes
glucose-utilno87.301no
glucose-fermentno92.825no

External links

@ref: 40720

culture collection no.: CIP 103579, ATCC 27740, LMG 6233, CCUG 64017

straininfo link

  • @ref: 95449
  • straininfo: 3865

literature

  • topic: Phylogeny
  • Pubmed-ID: 32845831
  • title: The status of the genus Prolinoborus (Pot et al. 1992) and the species Prolinoborus fasciculus (Pot et al. 1992).
  • authors: Glaeser SP, Pulami D, Blom J, Eisenberg T, Goesmann A, Bender J, Wilharm G, Kampfer P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004404
  • year: 2020
  • mesh: Acinetobacter/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Neisseriaceae/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40720Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103579Collection of Institut Pasteur (CIP 103579)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95449Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID3865.1