Name: Alkalibacterium psychrotolerans IDR2-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 138552

Type strain:

Species: Alkalibacterium psychrotolerans

Strain Designation: IDR2-2

Culture col. no.: CIP 108641, JCM 12281, NCIMB 13981, BCRC 17792

Strain history: CIP <- 2005, JCM <- I. Yumoto: strain IDR2-2

NCBI tax ID(s): 254784 (species)

SI-ID 134410

JCM 12281, NCIMB 13981, CIP 108641, BCRC 17792

Special Collections

Section

Alkalibacterium psychrotolerans IDR2-2 is a motile, rod-shaped bacterium of the family Carnobacteriaceae.

motile
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Alkalibacterium*
	Species	**Alkalibacterium psychrotolerans**
	Full Scientific Name (LPSN)	Alkalibacterium psychrotolerans Yumoto et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #40046]	Cell shape	rod-shaped

[Ref.: #40046]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #40046]

Culture medium

MEDIUM 381 - for Alkalibacterium

[Ref.: #40046]

Culture medium growth

[Ref.: #40046]

Culture medium composition

expand / minimize

[Ref.: #40046]

Culture medium

CIP Medium 381

[Ref.: #40046]

Culture medium growth

[Ref.: #40046]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #40046]		growth	25 °C
[Ref.: #40046]		growth	30 °C
[Ref.: #40046]	no	growth	41 °C
[Ref.: #67770]		growth	27 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #40046]		nitrate ChEBI	-	reduction
[Ref.: #40046]		nitrite ChEBI	-	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #40046]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #40046]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #40046]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #40046]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #40046]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #40046]	11353	-	-	+	+	-	-	-	-	-	-	-	+	-	-	+	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Polygonum indigo (Polygonum tinctorium Lour.) fermentation liquor obtained from Date
[Ref.: #67770]	Host species	Polygonum tinctorium
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #40046]	Sample type/isolated from	Fermented polygonum indigo
[Ref.: #40046]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #40046]	Country	Japan
[Ref.: #40046]	Country ISO 3 Code	JPN
[Ref.: #40046]	Continent	Asia

[Ref.: #40046]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #40046]	Country	Japan
[Ref.: #40046]	Country ISO 3 Code	JPN
[Ref.: #40046]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB125938 (>99% sequence identity) for Alkalibacterium psychrotolerans subclade from Microbeatlas

Aquatic Samples	61
Soil Samples	1
Animal Samples	11
Plant Samples	4
Total Samples	77

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #40046]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alkalibacterium psychrotolerans gene for 16S rRNA, partial sequence	AB125938	1492	GenBank ENA	254784 tax ID
[Ref.: #124043]	Alkalibacterium psychrotolerans gene for 16S rRNA, partial sequence, strain: JCM 12281.	AB294176	1526	GenBank ENA	254784 tax ID	*

[Ref.: #67770]

GC-content

40.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #40046]

Culture collection no.

CIP 108641, JCM 12281, NCIMB 13981, BCRC 17792

[Ref.: #95250]

SI-ID 134410

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkalibacterium psychrotolerans sp. nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye.	Yumoto I, Hirota K, Nodasaka Y, Yokota Y, Hoshino T, Nakajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.63130-0	2004	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40046 Collection of Institut Pasteur ; Curators of the CIP; CIP 108641
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#95250

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134410.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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