Cereibacter johrii (DSM 18678, JCM 14543, MTCC 8172)

Name: Cereibacter johrii (DSM 18678, JCM 14543, MTCC 8172)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13825

Type strain

Strain Designation JA192

Culture col. no. DSM 18678 JCM 14543 MTCC 8172 CCUG 53723 JA192

NCBI tax ID(s) 445629

Special Collections DSMZ CCUG JCM Literature strains

History Ch. Sasikala JA192.

Links

Cereibacter johrii JA192 is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from pasteurized rhizosphere soil of jowar collected from semi-arid tropical soil.

spore-forming Gram-negative motile ovoid-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 370648

MTCC 8172,DSM18678,JCM 14543,CCUG 53723T

@ref 20215

Last LPSN update 2026-02-09 11:21:15

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Cereibacter

Species Cereibacter johrii

Full scientific name Cereibacter johrii (Girija et al. 2010) Hördt et al. 2020

Synonyms (3)

"Luteovulum johrii"
Rhodobacter johrii
Luteovulum johrii

BacDive ID	Other strains from **Cereibacter johrii** (1)	Type strain
13819	C. johrii O.U.5, DSM 7066

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29369	negative	1.5-1.9 µm	0.8-0.9 µm	ovoid-shaped
125439	negative				96.8
125438	negative				98.982

Pigmentation

29369

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29369	positive	growth	25-35
29369	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
29369	positive	optimum	6.5-7
29369	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29369	anaerobe
125439	obligate aerobe	94.7

Spore formation

@ref	Spore formation	Confidence
29369
125439		95.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29369	NaCl	positive	growth	0-3 %

Observation

29369

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29369	30089 ChEBI	acetate	+	carbon source
29369	28757 ChEBI	fructose	+	carbon source
29369	17234 ChEBI	glucose	+	carbon source
29369	29987 ChEBI	glutamate	+	carbon source
29369	17754 ChEBI	glycerol	+	carbon source
29369	24996 ChEBI	lactate	+	carbon source
29369	25115 ChEBI	malate	+	carbon source
29369	29864 ChEBI	mannitol	+	carbon source
29369	15361 ChEBI	pyruvate	+	carbon source
29369	30911 ChEBI	sorbitol	+	carbon source
29369	30031 ChEBI	succinate	+	carbon source
29369	31011 ChEBI	valerate	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere
#Climate	#Hot	#Tropical

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
7655	pasteurized rhizosphere soil of jowar (sorghum) collected from semi-arid tropical soil	Andhra Pradesh, Godumakunta village near Hyderabad, India	India	IND	Asia
59990	Rhizosphere soil		India	IND	Asia	2003-01-23
67770	Semi-arid soil of Godumakunta Village near Hyderabad	Andhra Paradesh	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM398152 (>99% sequence identity) for Luteovulum from Microbeatlas

Aquatic Samples	10335
Soil Samples	1540
Animal Samples	4862
Plant Samples	492
Total Samples	17229

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7655	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM304632v1 assembly for Cereibacter johrii JA192	scaffold	GCA_003046325	445629.8	2740891827	445629	75.07
66792	ASM172058v1 assembly for Cereibacter johrii JA192	contig	GCA_001720585		2915617784	445629	23.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7655	Rhodobacter johrii partial 16S rRNA gene, type strain JA192T	AM398152	1430		445629

GC content

@ref	GC-content (mol%)	Method
7655	65.7	high performance liquid chromatography (HPLC)
29369	65.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cereibacter johrii JA192
NCBI: GCA_003046325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.70	no
125439	motility	BacteriaNetⓘ	yes	60.60	no
125439	gram_stain	BacteriaNetⓘ	negative	96.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cereibacter johrii JA192
NCBI: GCA_003046325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	yes
125438	anaerobic	anaerobicⓘ	no	69.36	yes
125438	aerobic	aerobicⓘ	yes	63.80	yes
125438	spore-forming	spore-formingⓘ	no	77.57	yes
125438	thermophilic	thermophileⓘ	no	98.50	no
125438	flagellated	motile2+ⓘ	yes	71.39	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
Phylogeny	Szabonella alba gen. nov., sp. nov., a motile alkaliphilic bacterium of the family Rhodobacteraceae isolated from a soda lake.	Szuroczki S, Abbaszade G, Boka K, Schumann P, Neumann-Schaal M, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.005219	2022

References

#7655	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18678
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25778	IJSEM 2099 2010 ( DOI 10.1099/ijs.0.011718-0 , PubMed 19854875 )
#29369	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25778
#59990	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53723
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cereibacter johrii (DSM 18678, JCM 14543, MTCC 8172)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003046325

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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