Ruegeria lacuscaerulensis (DSM 11314, ITI-1157)

Name: Ruegeria lacuscaerulensis (DSM 11314, ITI-1157)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13782

Type strain

Strain Designation ITI-1157

Culture col. no. DSM 11314 ITI-1157

NCBI tax ID(s) 644107 55218

Special Collections DSMZ

History DSMZ <- S. K. Pétursdóttir, ITI-1157

Links

Ruegeria lacuscaerulensis ITI-1157 is a bacterium of the family Roseobacteraceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49076

KCTC 2953,CECT 5319,LMG 23162,DSM 11314

@ref 20215

Last LPSN update 2026-05-29 08:28:07

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Ruegeria

Species Ruegeria lacuscaerulensis

Full scientific name Ruegeria lacuscaerulensis (Petursdottir and Kristjansson 1999) Yi et al. 2007

Synonyms (1)

Silicibacter lacuscaerulensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	92.229
125438	negative	99.333

Colony morphology

4293

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4293	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4293	positive	growth	45

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.829
125438		94.834

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	valine metabolism	100	9 of 9
66794	denitrification	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	CMP-KDO biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	ethanol fermentation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	proline metabolism	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	pyrimidine metabolism	86.67	39 of 45
66794	leucine metabolism	84.62	11 of 13
66794	purine metabolism	84.04	79 of 94
66794	NAD metabolism	83.33	15 of 18
66794	alanine metabolism	82.76	24 of 29
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	arginine metabolism	79.17	19 of 24
66794	citric acid cycle	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	d-mannose degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	histidine metabolism	75.86	22 of 29
66794	butanoate fermentation	75	3 of 4
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	isoleucine metabolism	75	6 of 8
66794	lactate fermentation	75	3 of 4
66794	vitamin B6 metabolism	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	lysine metabolism	71.43	30 of 42
66794	tryptophan metabolism	71.05	27 of 38
66794	myo-inositol biosynthesis	70	7 of 10
66794	sulfate reduction	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	non-pathway related	68.42	26 of 38
66794	IAA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	nitrate assimilation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	oxidative phosphorylation	63.74	58 of 91
66794	carnitine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	lipid metabolism	61.29	19 of 31
66794	cysteine metabolism	61.11	11 of 18
66794	3-phenylpropionate degradation	60	9 of 15
66794	3-chlorocatechol degradation	60	3 of 5
66794	flavin biosynthesis	60	9 of 15
66794	coenzyme M biosynthesis	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	propanol degradation	57.14	4 of 7
66794	phenol degradation	55	11 of 20
66794	degradation of pentoses	53.57	15 of 28
66794	cyclohexanol degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	selenocysteine biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	acetate fermentation	50	2 of 4
66794	polyamine pathway	47.83	11 of 23
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	degradation of sugar acids	44	11 of 25
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	cellulose degradation	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	d-xylose degradation	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	carotenoid biosynthesis	31.82	7 of 22
66794	ascorbate metabolism	31.82	7 of 22
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	starch degradation	30	3 of 10
66794	mevalonate metabolism	28.57	2 of 7
66794	metabolism of disaccharids	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation

@ref	Geographic location	Country	Country ISO 3 Code	Continent
4293	Blue Lagoon, geothermal lake in Reykjanes peninsula	Iceland	ISL	Europe

Taxonmaps

69479

Global distribution of 16S sequence U77644 (>99% sequence identity) for Ruegeria lacuscaerulensis from Microbeatlas

Aquatic Samples	900
Soil Samples	15
Animal Samples	88
Plant Samples	2
Total Samples	1005

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4293	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2698536695 annotated assembly for Ruegeria lacuscaerulensis ITI-1157	contig	GCA_900141625	644107.12	2698536695	644107	51.19
66792	ASM16177v1 assembly for Ruegeria lacuscaerulensis ITI-1157	scaffold	GCA_000161775	644107.3	647533208	644107	44.84

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Silicibacter lacuscaerulensis strain DSM11314 16S ribosomal RNA gene, partial sequence	DQ915630	1307		644107
4293	Ruegeria lacuscaerulensis strain ITI-1157 16S ribosomal RNA gene, partial sequence	U77644	1339		644107

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2698536695 annotated assembly for Ruegeria lacuscaerulensis ITI-1157
BV-BRC: 644107.12

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.22	no
125439	gram_stain	BacteriaNetⓘ	negative	92.23	no
125439	spore_formation	BacteriaNetⓘ	no	95.83	no
125439	motility	BacteriaNetⓘ	yes	52.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ruegeria lacuscaerulensis ITI-1157 ITI-1157
NCBI: GCA_000161775.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.33	no
125438	anaerobic	anaerobicⓘ	no	95.53	no
125438	aerobic	aerobicⓘ	yes	87.04	no
125438	spore-forming	spore-formingⓘ	no	94.83	no
125438	thermophilic	thermophileⓘ	no	95.60	no
125438	flagellated	motile2+ⓘ	no	60.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria.	Bullock HA, Reisch CR, Burns AS, Moran MA, Whitman WB	J Bacteriol	10.1128/JB.00026-14	2014
Phylogeny	Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus.	Christie-Oleza JA, Pina-Villalonga JM, Guerin P, Miotello G, Bosch R, Nogales B, Armengaud J	Environ Microbiol	10.1111/j.1462-2920.2012.02812.x	2012
Phylogeny	Thiosulfatihalobacter marinus gen. nov. sp. nov., a novel member of the family Roseobacteraceae, isolated from the West Pacific Ocean.	Wu Y, Ren WT, Zhong YW, Guo LL, Zhou P, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.005286	2022
Phylogeny	Ruegeria intermedia sp. nov., a moderately thermophilic bacterium isolated from a coastal hot spring.	Kampfer P, Arun AB, Rekha PD, Busse HJ, Young CC, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.047910-0	2012
Phylogeny	Ruegeria conchae sp. nov., isolated from the ark clam Scapharca broughtonii.	Lee J, Whon TW, Shin NR, Roh SW, Kim J, Park SK, Kim MS, Shin KS, Lee JS, Lee KC, Kim YO, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.037283-0	2012
Phylogeny	Ruegeria pelagia sp. nov., isolated from the Sargasso Sea, Atlantic Ocean.	Lee K, Choo YJ, Giovannoni SJ, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.65032-0	2007
Phylogeny	Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from oilfield sediments of the South China Sea.	Ying JY, Wang BJ, Dai X, Yang SS, Liu SJ, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.64825-0	2007
Phylogeny	Silicibacter lacuscaerulensis gen. nov., sp. nov., a mesophilic moderately halophilic bacterium characteristic of the Blue Lagoon geothermal lake in Iceland.	Petursdottir SK, Kristjansson JK	Extremophiles	10.1007/s007920050020	1997

References

#4293	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11314
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Ruegeria lacuscaerulensis (DSM 11314, ITI-1157)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900141625

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media