Name: Ruegeria pomeroyi DSS-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13783

Type strain:

Species: Ruegeria pomeroyi

Strain Designation: DSS-3

Culture col. no.: DSM 15171, ATCC 700808, CECT 7647

Strain history: <- M. A. Moran; DSS-3 <- J. S. Covert <- J. M. González

NCBI tax ID(s): 89184 (species)

SI-ID 44152

ATCC 700808, DSM 15171, LMG 23168, CECT 7647

Other strains from Ruegeria pomeroyi

R. pomeroyi DSS-10, DSM 15172

Section

Ruegeria pomeroyi DSS-3 is a mesophilic bacterium that was isolated from seawater.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Ruegeria*
	Species	**Ruegeria pomeroyi**
	Full Scientific Name (LPSN)	Ruegeria pomeroyi (González et al. 2003) Yi et al. 2007

Synonym

Silicibacter pomeroyi

Information on morphological and physiological properties Morphology

[Ref.: #5737]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5737]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5737]

Culture medium growth

[Ref.: #5737]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5737]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5737]			growth	30 °C

[Ref.: #5737]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #5737]	catalase	+	1.11.1.6
[Ref.: #5737]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #5737]	24648	-	-	-	-	-	+	+	-	+	-	-	-	+	-	+	-	+/-	+	-	-	not determinedn.d.
[Ref.: #5737]	23734	-	-	-	-	-	-	-	-	+	-	-	-	+	-	+	-	+/-	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5737]	Sample type/isolated from	seawater
[Ref.: #5737]	Geographic location (country and/or sea, region)	coast of Georgia
[Ref.: #5737]	Country	USA
[Ref.: #5737]	Country ISO 3 Code	USA
[Ref.: #5737]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF098491 (>99% sequence identity) for Ruegeria pomeroyi subclade from Microbeatlas

Aquatic Samples	446
Soil Samples	28
Animal Samples	78
Plant Samples	4
Total Samples	556

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5737]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5737]	Silicibacter pomeroyi strain DSS-3 16S ribosomal RNA gene, partial sequence	AF098491	1463	ENA	89184 tax ID
[Ref.: #20218]	Silicibacter pomeroyi strain DSM15171 16S ribosomal RNA gene, partial sequence	DQ915631	1306	ENA	89184 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ruegeria pomeroyi DSS-3	GCA_000011965	complete	GenBank	246200 tax ID	*
[Ref.: #66792]	Ruegeria pomeroyi DSS-3	246200.7	complete	PATRIC	246200 tax ID	*
[Ref.: #66792]	Ruegeria pomeroyi DSS-3	246200.37	plasmid	PATRIC	246200 tax ID	*
[Ref.: #66792]	Ruegeria pomeroyi DSS-3	637000267	complete	JGI IMG/M	246200 tax ID	*

[Ref.: #5737]

GC-content

68 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ruegeria pomeroyi DSS-3 DSS-3 NCBI: GCA_000011965.2
[Ref.: #69480]	motile	no	56.395	no
[Ref.: #69480]	flagellated	no	84.094	no
[Ref.: #69480]	gram-positive	no	98.276	no
[Ref.: #69480]	anaerobic	no	99.191	no
[Ref.: #69480]	halophile	yes	84.22	no
[Ref.: #69480]	spore-forming	no	96.174	no
[Ref.: #69480]	thermophile	no	96.868	no
[Ref.: #69480]	glucose-util	yes	71.42	yes
[Ref.: #69480]	aerobic	yes	91.876	no
[Ref.: #69480]	glucose-ferment	no	90.646	yes

Availability in culture collections External links

[Ref.: #5737]

Culture collection no.

DSM 15171, ATCC 700808, CECT 7647

[Ref.: #82962]

SI-ID 44152

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Dissolved organic phosphorus utilization by the marine bacterium Ruegeria pomeroyi DSS-3 reveals chain length-dependent polyphosphate degradation.	Adams JC, Steffen R, Chou CW, Duhamel S, Diaz JM	Environ Microbiol	10.1111/1462-2920.15877	2022	*
Phylogeny	Cryptic niche differentiation of novel sediment ecotypes of Ruegeria pomeroyi correlates with nitrate respiration.	Lin X, McNichol J, Chu X, Qian Y, Luo H	Environ Microbiol	10.1111/1462-2920.15882	2021	*
Enzymology	Substrate Specificity of the 3-Methylmercaptopropionyl Coenzyme A Dehydrogenase (DmdC1) from Ruegeria pomeroyi DSS-3.	Wang T, Shi H, Whitman WB	Appl Environ Microbiol	10.1128/AEM.01729-21	2021	*
Pathogenicity	Metabolism of chiral sulfonate compound 2,3-dihydroxypropane-1-sulfonate (DHPS) by Roseobacter bacteria in marine environment.	Chen X, Liu L, Gao X, Dai X, Han Y, Chen Q, Tang K	Environ Int	10.1016/j.envint.2021.106829	2021	*
Phylogeny	A new family of globally distributed lytic roseophages with unusual deoxythymidine to deoxyuridine substitution.	Rihtman B, Puxty RJ, Hapeshi A, Lee YJ, Zhan Y, Michniewski S, Waterfield NR, Chen F, Weigele P, Millard AD, Scanlan DJ, Chen Y	Curr Biol	10.1016/j.cub.2021.05.014	2021	*
Metabolism	Single-cell bacterial transcription measurements reveal the importance of dimethylsulfoniopropionate (DMSP) hotspots in ocean sulfur cycling.	Gao C, Fernandez VI, Lee KS, Fenizia S, Pohnert G, Seymour JR, Raina JB, Stocker R	Nat Commun	10.1038/s41467-020-15693-z	2020	*
Phylogeny	Ruegeria sediminis sp. nov., isolated from tidal flat sediment.	Baek J, Kim JH, Sukhoom A, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004128	2020	*
Metabolism	Tight Regulation of Extracellular Superoxide Points to Its Vital Role in the Physiology of the Globally Relevant Roseobacter Clade.	Hansel CM, Diaz JM, Plummer S	mBio	10.1128/mBio.02668-18	2019	*
Genetics	Genome Sequences of Five Bacteriophages Infecting the Marine Roseobacter Bacterium Ruegeria pomeroyi DSS-3.	Zhan Y, Huang S, Chen F	Microbiol Resour Announc	10.1128/MRA.00959-18	2018	*
Phylogeny	The smallest ssDNA phage infecting a marine bacterium.	Zhan Y, Chen F	Environ Microbiol	10.1111/1462-2920.14394	2018	*
Genetics	Elucidation of glutamine lipid biosynthesis in marine bacteria reveals its importance under phosphorus deplete growth in Rhodobacteraceae.	Smith AF, Rihtman B, Stirrup R, Silvano E, Mausz MA, Scanlan DJ, Chen Y	ISME J	10.1038/s41396-018-0249-z	2018	*
Genetics	Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model.	Hellweger FL, Huang Y, Luo H	ISME J	10.1038/s41396-017-0023-7	2018	*
Metabolism	100 Days of marine Synechococcus-Ruegeria pomeroyi interaction: A detailed analysis of the exoproteome.	Kaur A, Hernandez-Fernaud JR, Aguilo-Ferretjans MDM, Wellington EM, Christie-Oleza JA	Environ Microbiol	10.1111/1462-2920.14012	2017	*
Metabolism	Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere.	Eyice O, Myronova N, Pol A, Carrion O, Todd JD, Smith TJ, Gurman SJ, Cuthbertson A, Mazard S, Mennink-Kersten MA, Bugg TD, Andersson KK, Johnston AW, Op den Camp HJ, Schafer H	ISME J	10.1038/ismej.2017.148	2017	*
Metabolism	Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system.	Durham BP, Dearth SP, Sharma S, Amin SA, Smith CB, Campagna SR, Armbrust EV, Moran MA	Environ Microbiol	10.1111/1462-2920.13834	2017	*
Metabolism	Chemical differentiation of three DMSP lyases from the marine Roseobacter group.	Burkhardt I, Lauterbach L, Brock NL, Dickschat JS	Org Biomol Chem	10.1039/c7ob00913e	2017	*
Genetics	Spontaneous mutations of a model heterotrophic marine bacterium.	Sun Y, Powell KE, Sung W, Lynch M, Moran MA, Luo H	ISME J	10.1038/ismej.2017.20	2017	*
Phylogeny	A novel roseobacter phage possesses features of podoviruses, siphoviruses, prophages and gene transfer agents.	Zhan Y, Huang S, Voget S, Simon M, Chen F	Sci Rep	10.1038/srep30372	2016	*
Metabolism	Small RNAs expressed during dimethylsulfoniopropionate degradation by a model marine bacterium.	Burns AS, Bullock HA, Smith C, Huang Q, Whitman WB, Moran MA	Environ Microbiol Rep	10.1111/1758-2229.12437	2016	*
Metabolism	Feeding on compatible solutes: A substrate-induced pathway for uptake and catabolism of ectoines and its genetic control by EnuR.	Schulz A, Stoveken N, Binzen IM, Hoffmann T, Heider J, Bremer E	Environ Microbiol	10.1111/1462-2920.13414	2016	*
Metabolism	Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP.	Johnson WM, Kido Soule MC, Kujawinski EB	ISME J	10.1038/ismej.2016.6	2016	*
Metabolism	Purine catabolic pathway revealed by transcriptomics in the model marine bacterium Ruegeria pomeroyi DSS-3.	Cunliffe M	FEMS Microbiol Ecol	10.1093/femsec/fiv150	2015	*
Metabolism	Mechanistic Insight into Trimethylamine N-Oxide Recognition by the Marine Bacterium Ruegeria pomeroyi DSS-3.	Li CY, Chen XL, Shao X, Wei TD, Wang P, Xie BB, Qin QL, Zhang XY, Su HN, Song XY, Shi M, Zhou BC, Zhang YZ	J Bacteriol	10.1128/JB.00542-15	2015	*
Enzymology	Biochemical, Kinetic, and Spectroscopic Characterization of Ruegeria pomeroyi DddW--A Mononuclear Iron-Dependent DMSP Lyase.	Brummett AE, Schnicker NJ, Crider A, Todd JD, Dey M	PLoS One	10.1371/journal.pone.0127288	2015	*
Metabolism	Salinity as a regulator of DMSP degradation in Ruegeria pomeroyi DSS-3.	Salgado P, Kiene R, Wiebe W, Magalhaes C	J Microbiol	10.1007/s12275-014-4409-1	2014	*
Metabolism	Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling.	Lidbury ID, Murrell JC, Chen Y	ISME J	10.1038/ismej.2014.149	2014	*
Metabolism	Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria.	Lidbury I, Murrell JC, Chen Y	Proc Natl Acad Sci U S A	10.1073/pnas.1317834111	2014	*
Metabolism	Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria.	Bullock HA, Reisch CR, Burns AS, Moran MA, Whitman WB	J Bacteriol	10.1128/JB.00026-14	2014	*
Metabolism	Metabolism of dimethylsulphoniopropionate by Ruegeria pomeroyi DSS-3.	Reisch CR, Crabb WM, Gifford SM, Teng Q, Stoudemayer MJ, Moran MA, Whitman WB	Mol Microbiol	10.1111/mmi.12314	2013	*
Metabolism	Isotopically labeled sulfur compounds and synthetic selenium and tellurium analogues to study sulfur metabolism in marine bacteria.	Brock NL, Citron CA, Zell C, Berger M, Wagner-Dobler I, Petersen J, Brinkhoff T, Simon M, Dickschat JS	Beilstein J Org Chem	10.3762/bjoc.9.108	2013	*
Metabolism	Simultaneous catabolism of plant-derived aromatic compounds results in enhanced growth for members of the Roseobacter lineage.	Gulvik CA, Buchan A	Appl Environ Microbiol	10.1128/AEM.00405-13	2013	*
Phylogeny	Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades.	Green RT, Todd JD, Johnston AW	ISME J	10.1038/ismej.2012.140	2012	*
Metabolism	Physiological and metabolic effects of carbon monoxide oxidation in the model marine bacterioplankton Ruegeria pomeroyi DSS-3.	Cunliffe M	Appl Environ Microbiol	10.1128/AEM.02466-12	2012	*
Phylogeny	Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus.	Christie-Oleza JA, Pina-Villalonga JM, Guerin P, Miotello G, Bosch R, Nogales B, Armengaud J	Environ Microbiol	10.1111/j.1462-2920.2012.02812.x	2012	*
Metabolism	The Ruegeria pomeroyi acuI gene has a role in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate.	Todd JD, Curson AR, Sullivan MJ, Kirkwood M, Johnston AW	PLoS One	10.1371/journal.pone.0035947	2012	*
Genetics	Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.	Christie-Oleza JA, Pina-Villalonga JM, Bosch R, Nogales B, Armengaud J	Mol Cell Proteomics	10.1074/mcp.M111.013110	2011	*
Metabolism	Role of the phosphatase PhoX in the phosphorus metabolism of the marine bacterium Ruegeria pomeroyi DSS-3.	Sebastian M, Ammerman JW	Environ Microbiol Rep	10.1111/j.1758-2229.2011.00253.x	2011	*
Phylogeny	Proteomic insights into the lifestyle of an environmentally relevant marine bacterium.	Christie-Oleza JA, Fernandez B, Nogales B, Bosch R, Armengaud J	ISME J	10.1038/ismej.2011.86	2011	*
Metabolism	DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3.	Todd JD, Kirkwood M, Newton-Payne S, Johnston AW	ISME J	10.1038/ismej.2011.79	2011	*
Metabolism	Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria.	Reisch CR, Stoudemayer MJ, Varaljay VA, Amster IJ, Moran MA, Whitman WB	Nature	10.1038/nature10078	2011	*
Proteome	In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.	Christie-Oleza JA, Armengaud J	Mar Drugs	10.3390/md8082223	2010	*
Metabolism	DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria.	Todd JD, Curson AR, Kirkwood M, Sullivan MJ, Green RT, Johnston AW	Environ Microbiol	10.1111/j.1462-2920.2010.02348.x	2010	*
Phylogeny	Ruegeria marina sp. nov., isolated from marine sediment.	Huo YY, Xu XW, Li X, Liu C, Cui HL, Wang CS, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.022400-0	2010	*
Enzymology	2,3-Dihydroxypropane-1-sulfonate degraded by Cupriavidus pinatubonensis JMP134: purification of dihydroxypropanesulfonate 3-dehydrogenase.	Mayer J, Huhn T, Habeck M, Denger K, Hollemeyer K, Cook AM	Microbiology (Reading)	10.1099/mic.0.037580-0	2010	*
Genetics	Genome sequences of two novel phages infecting marine roseobacters.	Zhao Y, Wang K, Jiao N, Chen F	Environ Microbiol	10.1111/j.1462-2920.2009.01927.x	2009	*
Enzymology	The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins.	Lecher J, Pittelkow M, Zobel S, Bursy J, Bonig T, Smits SH, Schmitt L, Bremer E	J Mol Biol	10.1016/j.jmb.2009.03.077	2009	*
Enzymology	Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi.	Reisch CR, Moran MA, Whitman WB	J Bacteriol	10.1128/JB.00770-08	2008	*
Phylogeny	Occurrence and expression of gene transfer agent genes in marine bacterioplankton.	Biers EJ, Wang K, Pennington C, Belas R, Chen F, Moran MA	Appl Environ Microbiol	10.1128/AEM.02129-07	2008	*
Metabolism	Transcriptional response of Silicibacter pomeroyi DSS-3 to dimethylsulfoniopropionate (DMSP).	Burgmann H, Howard EC, Ye W, Sun F, Sun S, Napierala S, Moran MA	Environ Microbiol	10.1111/j.1462-2920.2007.01386.x	2007	*
Enzymology	Identification of a novel gentisate 1,2-dioxygenase from Silicibacter pomeroyi.	Liu D, Zhu T, Fan L, Quan J, Guo H, Ni J	Biotechnol Lett	10.1007/s10529-007-9421-7	2007	*
Phylogeny	Ruegeria pelagia sp. nov., isolated from the Sargasso Sea, Atlantic Ocean.	Lee K, Choo YJ, Giovannoni SJ, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.65032-0	2007	*
Metabolism	Inducible transcription of genes involved in taurine uptake and dissimilation by Silicibacter pomeroyi DSS-3T.	Gorzynska AK, Denger K, Cook AM, Smits TH	Arch Microbiol	10.1007/s00203-006-0106-8	2006	*
Metabolism	Dissimilation of C3-sulfonates.	Cook AM, Denger K, Smits TH	Arch Microbiol	10.1007/s00203-005-0069-1	2005	*
Enzymology	L-cysteate sulpho-lyase, a widespread pyridoxal 5'-phosphate-coupled desulphonative enzyme purified from Silicibacter pomeroyi DSS-3(T).	Denger K, Smits TH, Cook AM	Biochem J	10.1042/BJ20051311	2006	*
Phylogeny	Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage.	Buchan A, Neidle EL, Moran MA	Appl Environ Microbiol	10.1128/AEM.70.3.1658-1668.2004	2004	*
Phylogeny	Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments.	Gonzalez JM, Covert JS, Whitman WB, Henriksen JR, Mayer F, Scharf B, Schmitt R, Buchan A, Fuhrman JA, Kiene RP, Moran MA	Int J Syst Evol Microbiol	10.1099/ijs.0.02491-0	2003	*
Stress	Oxidative Stress Regulates a Pivotal Metabolic Switch in Dimethylsulfoniopropionate Degradation by the Marine Bacterium Ruegeria pomeroyi.	Wang T, Huang Q, Burns AS, Moran MA, Whitman WB	Microbiol Spectr	10.1128/spectrum.03191-22	2022	*
	Characterization of the Trimethylamine N-Oxide Transporter From Pelagibacter Strain HTCC1062 Reveals Its Oligotrophic Niche Adaption.	Gao C, Zhang N, He XY, Wang N, Zhang XY, Wang P, Chen XL, Zhang YZ, Ding JM, Li CY	Front Microbiol	10.3389/fmicb.2022.838608	2022	*
	A novel class of sulfur-containing aminolipids widespread in marine roseobacters.	Smith AF, Silvano E, Pauker O, Guillonneau R, Quareshy M, Murphy A, Mausz MA, Stirrup R, Rihtman B, Aguilo-Ferretjans M, Brandsma J, Petersen J, Scanlan DJ, Chen Y	ISME J	10.1038/s41396-021-00933-x	2021	*
	Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater.	Nowinski B, Moran MA	Nat Microbiol	10.1038/s41564-020-00851-2	2021	*
	Lipidomic Analysis of Roseobacters of the Pelagic RCA Cluster and Their Response to Phosphorus Limitation.	Silvano E, Yang M, Wolterink M, Giebel HA, Simon M, Scanlan DJ, Zhao Y, Chen Y	Front Microbiol	10.3389/fmicb.2020.552135	2020	*
	A Model Roseobacter, Ruegeria pomeroyi DSS-3, Employs a Diffusible Killing Mechanism To Eliminate Competitors.	Sharpe GC, Gifford SM, Septer AN	mSystems	10.1128/mSystems.00443-20	2020	*
	Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3.	Rivers AR, Burns AS, Chan LK, Moran MA	Front Microbiol	10.3389/fmicb.2016.00380	2016	*
	Erratum to: An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.	Rivers AR, Smith CB, Moran MA	Stand Genomic Sci	10.1186/s40793-015-0107-9	2015	*
	"You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions.	Christie-Oleza JA, Scanlan DJ, Armengaud J	Proteomics	10.1002/pmic.201400562	2015	*
	An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.	Rivers AR, Smith CB, Moran MA	Stand Genomic Sci	10.1186/1944-3277-9-11	2014	*
	Aminolipids elicit functional trade-offs between competitiveness and bacteriophage attachment in Ruegeria pomeroyi.	Stirrup R, Mausz MA, Silvano E, Murphy A, Guillonneau R, Quareshy M, Rihtman B, Ferretjans MA, He R, Todd JD, Chen F, Scanlan DJ, Chen Y	ISME J	10.1038/s41396-022-01346-0	2022	*

References

#5737

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15171

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82962

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44152.1 )

* These data were automatically processed and therefore are not curated

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Ruegeria pomeroyi DSS-3 DSS-3

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