Name: Rhodovulum kholense JA297
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13750

Type strain:

Species: Rhodovulum kholense

Strain Designation: JA297

Culture col. no.: DSM 19783, ATCC BAA-1544, CCUG 55397, JCM 14888

Strain history: <- C. Sasikala, Bacterial Discovery Lab., Centre Environment, Inst. Sci. and Technol., J. N. T. Univ., Hyderabad, India; JA297 <- P. A. Kumar

NCBI tax ID(s): 453584 (species)

SI-ID 411275

CCUG 55397

Section

Rhodovulum kholense JA297 is an obligate anaerobe, Gram-negative, motile bacterium that was isolated from photo-organoheterotrophic enrichment cultures obtained from a mud sample collected from Bhitarkanika mangrove forest.

Gram-negative
motile
rod-shaped
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Rhodovulum*
	Species	**Rhodovulum kholense**
	Full Scientific Name (LPSN)	Rhodovulum kholense Anil Kumar et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32522]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #32522]	Cell length	1.5-1.8 µm

[Ref.: #32522]	Cell width	0.5-1 µm

[Ref.: #32522]	Cell shape	rod-shaped

[Ref.: #32522]	Motility	yes

[Ref.: #32522]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32522]	growth	20-35 °C
[Ref.: #32522]	optimum	30 °C
[Ref.: #60568]	growth	30 °C

[Ref.: #32522]	Temperature range	mesophilic
[Ref.: #60568]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32522]			optimum	06-07
[Ref.: #32522]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8314]	Oxygen tolerance	obligate anaerobe
[Ref.: #32522]	Oxygen tolerance	facultative anaerobe
[Ref.: #60568]	Oxygen tolerance	aerobe

[Ref.: #32522]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.926

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32522]		NaCl		growth	0.05-6	%
[Ref.: #32522]		NaCl		optimum	01-04	%

[Ref.: #32522]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32522]	acetate ChEBI	+	carbon source
[Ref.: #32522]	gluconate ChEBI	+	carbon source
[Ref.: #32522]	glucose ChEBI	+	carbon source
[Ref.: #32522]	glutamate ChEBI	+	carbon source
[Ref.: #32522]	lactate ChEBI	+	carbon source
[Ref.: #32522]	pyruvate ChEBI	+	carbon source
[Ref.: #32522]	valerate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8314]	Sample type/isolated from	photo-organoheterotrophic enrichment cultures obtained from a mud sample collected from Bhitarkanika mangrove forest
[Ref.: #8314]	Geographic location (country and/or sea, region)	Orissa State, Khola (20° 43' N 86° 49' E)
[Ref.: #8314]	Country	India
[Ref.: #8314]	Country ISO 3 Code	IND
[Ref.: #8314]	Continent	Asia
[Ref.: #8314]	Geographic location	20.7167°/86.8167°

[Ref.: #60568]	Sample type/isolated from	Mud from Bhitarkanika mangrove forest
[Ref.: #60568]	Sampling date	2007-06-02
[Ref.: #60568]	Geographic location (country and/or sea, region)	Orissa state,Kholá
[Ref.: #60568]	Country	India
[Ref.: #60568]	Country ISO 3 Code	IND
[Ref.: #60568]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Forest

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8314]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8314]	Rhodovulum kholense partial 16S rRNA gene, type strain JA297T	AM748927	1370	ENA	453584 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodovulum kholense DSM 19783	GCA_003053725	contig	GenBank	453584 tax ID	*
[Ref.: #66792]	Rhodovulum kholense strain DSM 19783	453584.3	wgs	PATRIC	453584 tax ID	*
[Ref.: #66792]	Rhodovulum kholense DSM 19783	2734482290	draft	JGI IMG/M	453584 tax ID	*

[Ref.: #8314]	GC-content	63.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32522]	GC-content	63 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodovulum kholense strain DSM 19783 PATRIC: 453584.3
[Ref.: #69481]	spore-forming	no	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodovulum kholense strain DSM 19783 PATRIC: 453584.3
[Ref.: #69480]	gram-positive	no	98.972	yes
[Ref.: #69480]	anaerobic	yes	63.61	no
[Ref.: #69480]	halophile	no	58.065	no
[Ref.: #69480]	spore-forming	no	94.408	no
[Ref.: #69480]	glucose-util	yes	90.387	no
[Ref.: #69480]	aerobic	no	88.598	no
[Ref.: #69480]	flagellated	no	77.67	no
[Ref.: #69480]	thermophile	no	96.699	yes
[Ref.: #69480]	motile	yes	73.627	yes
[Ref.: #69480]	glucose-ferment	no	84.681	no

Availability in culture collections External links

[Ref.: #8314]

Culture collection no.

DSM 19783, ATCC BAA-1544, CCUG 55397, JCM 14888

[Ref.: #82932]

SI-ID 411275

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodovulum algae sp. nov., isolated from an algal mat.	Ramaprasad EVV, Tushar L, Dave B, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001203	2016	*
Phylogeny	Rhodovulum salis sp. nov. and Rhodovulum viride sp. nov., phototrophic Alphaproteobacteria isolated from marine habitats.	Srinivas A, Kumar BV, Sree BD, Tushar L, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.058974-0	2013	*
Phylogeny	Rhodovulum kholense sp. nov.	Kumar PA, Aparna P, Srinivas TN, Sasikala Ch, Ramana ChV	Int J Syst Evol Microbiol	10.1099/ijs.0.65620-0	2008	*

References

#8314

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19783

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32522

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28741 (see below)

#60568 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55397

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82932

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411275.1 )

#28741

IJSEM 1723 2008 ( DOI 10.1099/ijs.0.65620-0 , PubMed 18599724 )

* These data were automatically processed and therefore are not curated

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Rhodovulum kholense strain DSM 19783

Rhodovulum kholense strain DSM 19783

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