Paracoccus saliphilus (DSM 18447, CCTCC AB 206074, KCTC 22163)

Name: Paracoccus saliphilus (DSM 18447, CCTCC AB 206074, KCTC 22163)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13728

Type strain

Culture col. no. DSM 18447 CCTCC AB 206074 KCTC 22163 YIM 90738

NCBI tax ID(s) 405559

Special Collections DSMZ KCTC Literature strains

Links

Paracoccus saliphilus DSM 18447 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from saline-alkali soil.

Gram-negative coccus-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402335

KCTC 22163,DSM 18447

@ref 20215

Last LPSN update 2025-12-16 09:50:10

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Paracoccus

Species Paracoccus saliphilus

Full scientific name Paracoccus saliphilus Wang et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29088	negative	4 µm	1.8 µm	coccus-shaped
125439	negative				96.5
125438	negative				97

Pigmentation

29088

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7476	ISP MEDIUM 2 WITH 5% NaCl (DSMZ Medium 636)		Medium recipe at MediaDive	Name: ISP MEDIUM 2 WITH 5% NaCl (DSMZ Medium 636) Composition: NaCl 50.0 g/l Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7476	positive	growth	37	mesophilic
29088	positive	growth	10-55
29088	positive	optimum	37	mesophilic

Culture pH

@ref	Ability	Type	PH
29088	positive	optimum	7
29088	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

29088

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
29088
125439		96.7
125438		90.969

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29088	NaCl	positive	growth	1.0-15 %
29088	NaCl	positive	optimum	8 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29088	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
29088	30089 ChEBI	acetate	+	carbon source
29088	16449 ChEBI	alanine	+	carbon source
29088	40585 ChEBI	alpha-cyclodextrin	+	carbon source
29088	22599 ChEBI	arabinose	+	carbon source
29088	22653 ChEBI	asparagine	+	carbon source
29088	35391 ChEBI	aspartate	+	carbon source
29088	16947 ChEBI	citrate	+	carbon source
29088	17126 ChEBI	DL-carnitine	+	carbon source
29088	4853 ChEBI	esculin	+	hydrolysis
29088	15740 ChEBI	formate	+	carbon source
29088	28757 ChEBI	fructose	+	carbon source
29088	33984 ChEBI	fucose	+	carbon source
29088	28260 ChEBI	galactose	+	carbon source
29088	24175 ChEBI	galacturonate	+	carbon source
29088	24265 ChEBI	gluconate	+	carbon source
29088	17234 ChEBI	glucose	+	carbon source
29088	29987 ChEBI	glutamate	+	carbon source
29088	17754 ChEBI	glycerol	+	carbon source
29088	28087 ChEBI	glycogen	+	carbon source
29088	27570 ChEBI	histidine	+	carbon source
29088	17596 ChEBI	inosine	+	carbon source
29088	21217 ChEBI	L-alaninamide	+	carbon source
29088	18403 ChEBI	L-arabitol	+	carbon source
29088	24996 ChEBI	lactate	+	carbon source
29088	17716 ChEBI	lactose	+	carbon source
29088	25017 ChEBI	leucine	+	carbon source
29088	37684 ChEBI	mannose	+	carbon source
29088	28053 ChEBI	melibiose	+	carbon source
29088	51850 ChEBI	methyl pyruvate	+	carbon source
29088	18257 ChEBI	ornithine	+	carbon source
29088	50048 ChEBI	phenylethylamine	+	carbon source
29088	26271 ChEBI	proline	+	carbon source
29088	17148 ChEBI	putrescine	+	carbon source
29088	26490 ChEBI	quinate	+	carbon source
29088	15963 ChEBI	ribitol	+	carbon source
29088	17822 ChEBI	serine	+	carbon source
29088	30911 ChEBI	sorbitol	+	carbon source
29088	30031 ChEBI	succinate	+	carbon source
29088	17992 ChEBI	sucrose	+	carbon source
29088	26986 ChEBI	threonine	+	carbon source
29088	17748 ChEBI	thymidine	+	carbon source
29088	16704 ChEBI	uridine	+	carbon source
29088	27248 ChEBI	urocanic acid	+	carbon source
29088	17151 ChEBI	xylitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29088	acid phosphatase	+	3.1.3.2
29088	alkaline phosphatase	+	3.1.3.1
29088	catalase	+	1.11.1.6
29088	cytochrome oxidase	+	1.9.3.1
29088	gelatinase	+
29088	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	photosynthesis	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	glycogen biosynthesis	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	4-hydroxymandelate degradation	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	ketogluconate metabolism	87.5	7 of 8
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	degradation of sugar acids	84	21 of 25
66794	proline metabolism	81.82	9 of 11
66794	myo-inositol biosynthesis	80	8 of 10
66794	propionate fermentation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin B12 metabolism	79.41	27 of 34
66794	purine metabolism	78.72	74 of 94
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	pyrimidine metabolism	75.56	34 of 45
66794	biotin biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	tryptophan metabolism	73.68	28 of 38
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	alanine metabolism	72.41	21 of 29
66794	tyrosine metabolism	71.43	10 of 14
66794	degradation of pentoses	71.43	20 of 28
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	arginine metabolism	70.83	17 of 24
66794	oxidative phosphorylation	69.23	63 of 91
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	heme metabolism	64.29	9 of 14
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	urea cycle	61.54	8 of 13
66794	sulfate reduction	61.54	8 of 13
66794	3-chlorocatechol degradation	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	d-mannose degradation	55.56	5 of 9
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	lysine metabolism	52.38	22 of 42
66794	polyamine pathway	52.17	12 of 23
66794	kanosamine biosynthesis II	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	degradation of hexoses	50	9 of 18
66794	cyclohexanol degradation	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	phenol degradation	50	10 of 20
66794	quinate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	ascorbate metabolism	50	11 of 22
66794	metabolism of disaccharids	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	starch degradation	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	hydrogen production	40	2 of 5
66794	cellulose degradation	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	carotenoid biosynthesis	22.73	5 of 22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7476	saline-alkali soil	Xinjiang province, edge of Ebinur Lake wetland natural reserve	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ923133 (>99% sequence identity) for Paracoccus from Microbeatlas

Aquatic Samples	124
Soil Samples	31
Animal Samples	19
Plant Samples	2
Total Samples	176

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7476	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2855380v1 assembly for Paracoccus saliphilus DSM 18447	complete	GCA_028553805	405559.6	8114135145	405559	96.65
124043	IMG-taxon 2681813562 annotated assembly for Paracoccus saliphilus DSM 18447	scaffold	GCA_900156835	405559.3	2681813562	405559	66.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7476	Paracoccus saliphilus strain YIM 90738 16S ribosomal RNA gene, partial sequence	DQ923133	1389		405559

GC content

@ref	GC-content (mol%)	Method
7476	60.3	high performance liquid chromatography (HPLC)
29088	60.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paracoccus saliphilus strain DSM 18447
PATRIC: 405559.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.70	no
125439	motility	BacteriaNetⓘ	yes	61.40	no
125439	gram_stain	BacteriaNetⓘ	negative	96.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	76.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paracoccus saliphilus DSM 18447
NCBI: GCA_028553805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	95.81	yes
125438	aerobic	aerobicⓘ	yes	81.37	yes
125438	spore-forming	spore-formingⓘ	no	90.97	yes
125438	thermophilic	thermophileⓘ	no	99.28	no
125438	flagellated	motile2+ⓘ	no	56.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinity-influenced changes in the community and functional composition of zooplankton-associated bacteria in the lakes of Inner Mongolia.	Li Y, Wang Q, Chen D, Liu X, Chen F.	Front Microbiol	10.3389/fmicb.2025.1529512	2025
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
Phylogeny	Paracoccus onubensis sp. nov., a novel alphaproteobacterium isolated from the wall of a show cave.	Gutierrez-Patricio S, Gonzalez-Pimentel JL, Miller AZ, Hermosin B, Saiz-Jimenez C, Jurado V	Int J Syst Evol Microbiol	10.1099/ijsem.0.004942	2021
Phylogeny	Paracoccus alkanivorans sp. nov., isolated from a deep well with oil reservoir water.	Zhang YX, Li X, Li FL, Ma SC, Zheng GD, Chen WF, Li WJ, Wang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004036	2020
Phylogeny	Paracoccus saliphilus sp. nov., a halophilic bacterium isolated from a saline soil.	Wang Y, Tang SK, Lou K, Mao PH, Jin X, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.005918-0	2009

References

#7476	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18447
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29088	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25517 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paracoccus saliphilus (DSM 18447, CCTCC AB 206074, KCTC 22163)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_028553805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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