Name: Helicobacter pametensis B12A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 137264

Type strain:

Species: Helicobacter pametensis

Strain Designation: B12A

Culture col. no.: CIP 104250, ATCC 51479, CCUG 29257, LMG 12680

Strain history: CIP <- 1994, CCUG <- 1991, F.E. Dewhirst, FDC, Boston, USA <- C. Seymour, Boston, USA: strain B12A

NCBI tax ID(s): 95149 (species)

SI-ID 6895

LMG 12680, ATCC 51479, CCUG 29257, LMG 17298, CIP 104250

Other strains from Helicobacter pametensis

H. pametensis B9, B9A, DSM 29139, ATCC 51478, ... (type strain)
H. pametensis CCUG 29253
H. pametensis CCUG 29259
H. pametensis CCUG 29260, LMG 12682

Section

Helicobacter pametensis B12A is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Gull feces.

Gram-negative
motile
rod-shaped
mesophilic
microaerophile
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Helicobacter*
	Species	**Helicobacter pametensis**
	Full Scientific Name (LPSN)	Helicobacter pametensis Dewhirst et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #37169]	Gram stain	negative

[Ref.: #37169]	Cell shape	rod-shaped

[Ref.: #37169]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37169]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #37169]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Brucella broth

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Culture medium growth

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Culture medium

CIP Medium 6

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 45

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #37169]		growth	37 °C
[Ref.: #37169]		growth	37-41 °C
[Ref.: #37169]	no	growth	5 °C
[Ref.: #37169]	no	growth	10 °C
[Ref.: #37169]	no	growth	25 °C
[Ref.: #37169]	no	growth	30 °C
[Ref.: #37169]	no	growth	45 °C
[Ref.: #49559]		growth	42 °C

[Ref.: #37169]	Temperature range	mesophilic
[Ref.: #37169]	Temperature range	psychrophilic
[Ref.: #37169]	Temperature range	mesophilic
[Ref.: #37169]	Temperature range	thermophilic
[Ref.: #49559]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #49559]

Oxygen tolerance

microaerophile

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #37169]		NaCl	no	growth	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #37169]	hippurate ChEBI	-	hydrolysis
[Ref.: #37169]	nitrate ChEBI	+	reduction
[Ref.: #37169]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #37169]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #37169]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #37169]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #37169]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #37169]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #37169]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #37169]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #49559]

Fatty acid	Percentage	ECL
C14:0	36.5	14
C16:0	32	16
C18:1 ω7c /12t/9t	15.8	17.824
C14:0 3OH/C16:1 ISO I	4.6	15.485
C16:0 3OH	3	17.52
C18:2 ω6,9c/C18:0 ANTE	2.8	17.724
C12:0	1.9	12
C18:1 ω9c	0.8	17.769
C18:0	0.6	18
C15:0	0.6	15
C16:1 ω7c	0.4	15.819
C17:0	0.3	17
C13:0	0.3	13
C13:0 ISO 2OH	0.2	13.814
Unidentified	0.2	15.936
Unidentified	0.1	13.93

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #37169]	7860	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #49559]	Sample type/isolated from	Gull feces

[Ref.: #37169]	Sample type/isolated from	Gull, feces
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Birds	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (French classification)

Availability in culture collections External links

[Ref.: #37169]

Culture collection no.

CIP 104250, ATCC 51479, CCUG 29257, LMG 12680

[Ref.: #94201]

SI-ID 6895

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37169 Collection of Institut Pasteur ; Curators of the CIP; CIP 104250
#49559 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29257

#68382

Automatically annotated from API zym .

#94201

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6895.1 )

* These data were automatically processed and therefore are not curated

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