Name: Veillonella seminalis strain 22/08/02-B-4313
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136700

Type strain:

Species: Veillonella seminalis

Strain Designation: strain 22/08/02-B-4313, AIP269.02

Culture col. no.: CIP 107810, CCUG 65427, DSM 111052, LMG 28162, ADV 4313.2

Strain history: CIP <- 2003, J.P. Carlier, Inst. Pasteur, Paris, France : strain AIP269.02 <- CHU Montpellier, France: strain ADV 4313.2

NCBI tax ID(s): 1502943 (species)

SI-ID 392186

LMG 28162, CIP 107810

Section

Veillonella seminalis strain 22/08/02-B-4313 is an anaerobe, mesophilic, Gram-negative bacterium of the family Veillonellaceae.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Veillonella*
	Species	**Veillonella seminalis**
	Full Scientific Name (LPSN)	Veillonella seminalis Aujoulat et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #36206]	Gram stain	negative

[Ref.: #36206]	Cell shape	rod-shaped

[Ref.: #36206]	Motility	no

[Ref.: #63222]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36206]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #36206]

Culture medium growth

[Ref.: #36206]

Culture medium composition

expand / minimize

[Ref.: #66421]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #66421]

Culture medium growth

[Ref.: #66421]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66421]

Culture medium composition

expand / minimize

[Ref.: #66421]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #66421]

Culture medium growth

[Ref.: #66421]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66421]

Culture medium composition

expand / minimize

[Ref.: #36206]

Culture medium

CIP Medium 6

[Ref.: #36206]

Culture medium growth

[Ref.: #36206]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #36206]

Culture medium

CIP Medium 20

[Ref.: #36206]

Culture medium growth

[Ref.: #36206]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #36206]	growth	37 °C
[Ref.: #63222]	growth	37 °C
[Ref.: #66421]	growth	37 °C

[Ref.: #36206]	Temperature range	mesophilic
[Ref.: #63222]	Temperature range	mesophilic
[Ref.: #66421]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63222]	Oxygen tolerance	anaerobe
[Ref.: #36206]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #36206]	esculin ChEBI	-	hydrolysis
[Ref.: #36206]	hippurate ChEBI	+	hydrolysis
[Ref.: #36206]	nitrate ChEBI	+	reduction
[Ref.: #36206]	nitrate ChEBI	+	respiration
[Ref.: #36206]	nitrite ChEBI	+	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #36206]		metronidazole ChEBI	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #36206]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #36206]	amylase	-
[Ref.: #36206]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #36206]	caseinase	-	3.4.21.50
[Ref.: #36206]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #36206]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #36206]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #36206]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #36206]	tween esterase	-
[Ref.: #36206]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #36206]	10668	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63222]	Sample type/isolated from	Human semen
[Ref.: #63222]	Sampling date	2002-08-22
[Ref.: #63222]	Geographic location (country and/or sea, region)	Montpellier
[Ref.: #63222]	Country	France
[Ref.: #63222]	Country ISO 3 Code	FRA
[Ref.: #63222]	Continent	Europe

[Ref.: #66421]	Sample type/isolated from	human semen
[Ref.: #66421]	Geographic location (country and/or sea, region)	Montpellier
[Ref.: #66421]	Country	France
[Ref.: #66421]	Country ISO 3 Code	FRA
[Ref.: #66421]	Continent	Europe
[Ref.: #66421]	Geographic location	43.6167°/3.8833°

[Ref.: #36206]	Sample type/isolated from	Human, Semen
[Ref.: #36206]	Country	France
[Ref.: #36206]	Country ISO 3 Code	FRA
[Ref.: #36206]	Continent	Europe
[Ref.: #36206]	Isolation date	2002

[Ref.: #36206]	Country	France
[Ref.: #36206]	Country ISO 3 Code	FRA
[Ref.: #36206]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Urogenital tract	#Semen
#Host	#Human	-
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY211542 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	1397
Soil Samples	357
Animal Samples	36120
Plant Samples	169
Total Samples	38043

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #66421]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #36206]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66421]	Veillonella seminalis strain ADV 4313.2 16S ribosomal RNA gene, partial sequence	AY211542	1343	ENA	1502943 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Veillonella seminalis CCUG 65427	GCA_008830375	contig	GenBank	1502943 tax ID	*
[Ref.: #66792]	Veillonella seminalis strain CCUG 65427	1502943.44	wgs	PATRIC	1502943 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Veillonella seminalis strain CCUG 65427 PATRIC: 1502943.44
[Ref.: #69480]	motile	no	93.309	no
[Ref.: #69480]	gram-positive	no	92.444	no
[Ref.: #69480]	anaerobic	yes	98.744	yes
[Ref.: #69480]	aerobic	no	95.967	yes
[Ref.: #69480]	halophile	no	87.225	no
[Ref.: #69480]	spore-forming	no	88.399	no
[Ref.: #69480]	thermophile	no	94.58	yes
[Ref.: #69480]	glucose-util	yes	73.06	no
[Ref.: #69480]	flagellated	no	96.89	no
[Ref.: #69480]	glucose-ferment	no	52.034	no

Availability in culture collections External links

[Ref.: #66421]

Culture collection no.

CIP 107810, CCUG 65427, DSM 111052, LMG 28162, ADV 4313.2

[Ref.: #93792]

SI-ID 392186

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Veillonella seminalis sp. nov., a novel anaerobic Gram-stain-negative coccus from human clinical samples, and emended description of the genus Veillonella.	Aujoulat F, Bouvet P, Jumas-Bilak E, Jean-Pierre H, Marchandin H	Int J Syst Evol Microbiol	10.1099/ijs.0.064451-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36206 Collection of Institut Pasteur ; Curators of the CIP; CIP 107810
#63222 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 65427

#66421

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111052

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#93792

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID392186.1 )

* These data were automatically processed and therefore are not curated

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Veillonella seminalis strain CCUG 65427

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