Name: Rhizobium cellulosilyticum DSM 18291
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13631

Type strain:

Species: Rhizobium cellulosilyticum

Culture col. no.: DSM 18291, ALA 10B2

Strain history: <- E. Velázquez <- P. García-Fraile; ALA 10B2

NCBI tax ID(s): 393664 (species)

SI-ID 293619

LMG 23642, CECT 7176, DSM 18291

Section

Rhizobium cellulosilyticum DSM 18291 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from sawdust of Populus alba.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium cellulosilyticum**
	Full Scientific Name (LPSN)	Rhizobium cellulosilyticum García-Fraile et al. 2007

Synonym

"Alirhizobium cellulosilyticum"

Information on morphological and physiological properties Morphology

[Ref.: #31937]	Gram stain	negative

[Ref.: #31937]	Cell shape	rod-shaped

[Ref.: #31937]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7487]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7487]

Culture medium growth

[Ref.: #7487]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7487]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7487]	growth	28 °C
[Ref.: #31937]	growth	04-37 °C
[Ref.: #31937]	optimum	28 °C

[Ref.: #7487]	Temperature range	mesophilic
[Ref.: #31937]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31937]			optimum	7-7.5
[Ref.: #31937]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31937]		NaCl		growth	0-4	%
[Ref.: #31937]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31937]	arabinose ChEBI	+	carbon source
[Ref.: #31937]	esculin ChEBI	+	hydrolysis
[Ref.: #31937]	glucose ChEBI	+	carbon source
[Ref.: #31937]	glutamate ChEBI	+	carbon source
[Ref.: #31937]	malate ChEBI	+	carbon source
[Ref.: #31937]	maltose ChEBI	+	carbon source
[Ref.: #31937]	mannitol ChEBI	+	carbon source
[Ref.: #31937]	mannose ChEBI	+	carbon source
[Ref.: #31937]	N-acetylglucosamine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31937]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7487]	Sample type/isolated from	sawdust of Populus alba
[Ref.: #7487]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #7487]	Country	Spain
[Ref.: #7487]	Country ISO 3 Code	ESP
[Ref.: #7487]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Dust (Ash)
#Host	#Plants	#Tree

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7487]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7487]	Rhizobium cellulosilyticum strain ALA10B2 16S ribosomal RNA gene, partial sequence	DQ855276	1474	ENA	393664 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium cellulosilyticum DSM 18291	2738541318	draft	JGI IMG/M	393664 tax ID	*

[Ref.: #31937]

GC-content

57 mol%

Availability in culture collections External links

[Ref.: #7487]

Culture collection no.

DSM 18291, ALA 10B2

[Ref.: #82817]

SI-ID 293619

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobium wenxiniae sp. nov., an endophytic bacterium isolated from maize root.	Gao JL, Sun P, Wang XM, Lv FY, Mao XJ, Sun JG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002025	2017	*
Phylogeny	Rhizobium zeae sp. nov., isolated from maize (Zea mays L.) roots.	Celador-Lera L, Menendez E, Peix A, Igual JM, Velazquez E, Rivas R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001944	2017	*
Phylogeny	Rhizobium yantingense sp. nov., a mineral-weathering bacterium.	Chen W, Sheng XF, He LY, Huang Z	Int J Syst Evol Microbiol	10.1099/ijs.0.064428-0	2014	*
Phylogeny	Rhizobium cellulosilyticum sp. nov., isolated from sawdust of Populus alba.	Garcia-Fraile P, Rivas R, Willems A, Peix A, Martens M, Martinez-Molina E, Mateos PF, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64680-0	2007	*

References

#7487

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18291

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31937

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28193 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82817

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293619.1 )

#28193

IJSEM 844 2007 ( DOI 10.1099/ijs.0.64680-0 , PubMed 17392217 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhizobium cellulosilyticum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF