Edwardsiella hoshinae (CIP 78.53, ATCC 35051)

Name: Edwardsiella hoshinae (CIP 78.53, ATCC 35051)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 135791

Type strain

Culture col. no. CIP 78.53 ATCC 35051

NCBI tax ID(s) 93378

Special Collections CIP

Links

Edwardsiella hoshinae CIP 78.53 is a mesophilic prokaryote of the family Hafniaceae.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 46773

ATCC 35051,CCM 3549,CIP 78.53,CNCTC 7381

@ref 20215

Last LPSN update 2025-12-16 10:02:24

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Hafniaceae

Genus Edwardsiella

Species Edwardsiella hoshinae

Full scientific name Edwardsiella hoshinae Grimont et al. 1981

BacDive ID	Other strains from **Edwardsiella hoshinae** (10)	Type strain
4357	E. hoshinae 2-78, DSM 13771, ATCC 33379, CIP 78.56, JCM ... (type strain)
134865	E. hoshinae CIP 78.51
135406	E. hoshinae CIP 78.55
135488	E. hoshinae 490-72, 18-79, CIP 79.31
135789	E. hoshinae CIP 78.52, CCUG 20937
135793	E. hoshinae CIP 78.54, ATCC 35052
137586	E. hoshinae CIP 78.57, ATCC 35050
143674	E. hoshinae CCUG 20938
143756	E. hoshinae CCUG 21191
143757	E. hoshinae CCUG 21192

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.3
125438	negative	99.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
35038	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
35038	CIP Medium 3			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
35038	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.9
125438		91.643

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
35038		N'Djamena	Chad	TCD	Africa
35038	Animal, Lizard (varan)	N'Djamena	Chad	TCD	Africa	1978

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
35038	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM176140v1 assembly for Edwardsiella hoshinae ATCC 35051	complete	GCA_001761405	93378.4	2718217990	93378	92.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Edwardsiella ictaluri strain 11-193A 16S ribosomal RNA gene, partial sequence.	KM676416	1483		93378

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Edwardsiella hoshinae ATCC 35051
NCBI: GCA_001761405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.90	no
125439	motility	BacteriaNetⓘ	yes	85.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	64.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Edwardsiella hoshinae ATCC 35051
NCBI: GCA_001761405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	87.62	no
125438	aerobic	aerobicⓘ	no	78.30	no
125438	spore-forming	spore-formingⓘ	no	91.64	no
125438	thermophilic	thermophileⓘ	no	98.08	no
125438	flagellated	motile2+ⓘ	yes	69.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification and Characterization of EvpQ, a Novel T6SS Effector Encoded on a Mobile Genetic Element in Edwardsiella piscicida.	Li DY, Liu YL, Liao XJ, He TT, Sun SS, Nie P, Xie HX.	Front Microbiol	10.3389/fmicb.2021.643498	2021
	A Peroxide-Responding sRNA Evolved from a Peroxidase mRNA.	Krieger MC, Dutcher HA, Ashford AJ, Raghavan R.	Mol Biol Evol	10.1093/molbev/msac020	2022
Phylogeny	Comparative Phenotypic and Genotypic Analysis of Edwardsiella Isolates from Different Hosts and Geographic Origins, with Emphasis on Isolates Formerly Classified as E. tarda, and Evaluation of Diagnostic Methods.	Reichley SR, Ware C, Steadman J, Gaunt PS, Garcia JC, LaFrentz BR, Thachil A, Waldbieser GC, Stine CB, Bujan N, Arias CR, Loch T, Welch TJ, Cipriano RC, Greenway TE, Khoo LH, Wise DJ, Lawrence ML, Griffin MJ.	J Clin Microbiol	10.1128/jcm.00970-17	2017
Genetics	Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087.	Tekedar HC, Blom J, Kalindamar S, Nho S, Karsi A, Lawrence ML.	Microb Genom	10.1099/mgen.0.000322	2020
	Penetration and replication of Edwardsiella spp. in HEp-2 cells.	Janda JM, Abbott SL, Oshiro LS.	Infect Immun	10.1128/iai.59.1.154-161.1991	1991
Phylogeny	Systemic Edwardsiella tarda infection in a Western African lungfish (Protopterus annectens) with cytologic observation of heterophil projections.	Rousselet E, Stacy NI, Rotstein DS, Waltzek TB, Griffin MJ, Francis-Floyd R	J Fish Dis	10.1111/jfd.12831	2018
Genetics	Complete Genome Sequence of Edwardsiella hoshinae ATCC 35051.	Reichley SR, Waldbieser GC, Lawrence ML, Griffin MJ	Genome Announc	10.1128/genomeA.01605-16	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#35038	Collection of Institut Pasteur ; Curators of the CIP; CIP 78.53
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Edwardsiella hoshinae (CIP 78.53, ATCC 35051)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001761405

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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