Strain identifier
BacDive ID: 135791
Type strain: 
Species: Edwardsiella hoshinae
Strain history: CIP <- 1978, C. Richard, Inst. Pasteur, Paris, France: strain 10-66
NCBI tax ID(s): 93378 (species)
version 8.1 (current version)
General
@ref: 35038
BacDive-ID: 135791
keywords: genome sequence, Bacteria, mesophilic, motile
description: Edwardsiella hoshinae CIP 78.53 is a mesophilic, motile bacterium of the family Hafniaceae.
NCBI tax id
- NCBI tax id: 93378
- Matching level: species
strain history
- @ref: 35038
- history: CIP <- 1978, C. Richard, Inst. Pasteur, Paris, France: strain 10-66
doi: 10.13145/bacdive135791.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Hafniaceae
- genus: Edwardsiella
- species: Edwardsiella hoshinae
- full scientific name: Edwardsiella hoshinae Grimont et al. 1981
@ref: 35038
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Hafniaceae
genus: Edwardsiella
species: Edwardsiella hoshinae
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.518 | |
| 69480 | 99.913 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 35038 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 35038 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 35038
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.407 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 35038 | N'Djamena | Chad | TCD | Africa | ||
| 35038 | N'Djamena | Chad | TCD | Africa | Animal, Lizard (varan) | 1978 |
Safety information
risk assessment
- @ref: 35038
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Edwardsiella hoshinae ATCC 35051 | GCA_001761405 | complete | ncbi | 93378 |
| 66792 | Edwardsiella hoshinae strain ATCC 35051 | 93378.4 | complete | patric | 93378 |
| 66792 | Edwardsiella hoshinae ATCC 35051 | 2718217990 | complete | img | 93378 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | yes | 59.64 | no |
| gram-positive | no | 98.623 | no |
| anaerobic | no | 80.228 | no |
| aerobic | no | 50.768 | no |
| halophile | no | 86.915 | no |
| spore-forming | no | 96.019 | no |
| glucose-util | yes | 91.406 | no |
| thermophile | no | 97.679 | no |
| motile | yes | 90.634 | no |
| glucose-ferment | yes | 92.307 | no |
External links
@ref: 35038
culture collection no.: CIP 78.53, ATCC 35051
straininfo link
- @ref: 93078
- straininfo: 46773
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 28183769 | Complete Genome Sequence of Edwardsiella hoshinae ATCC 35051. | Reichley SR, Waldbieser GC, Lawrence ML, Griffin MJ | Genome Announc | 10.1128/genomeA.01605-16 | 2017 | ||
| Phylogeny | 29882594 | Systemic Edwardsiella tarda infection in a Western African lungfish (Protopterus annectens) with cytologic observation of heterophil projections. | Rousselet E, Stacy NI, Rotstein DS, Waltzek TB, Griffin MJ, Francis-Floyd R | J Fish Dis | 10.1111/jfd.12831 | 2018 | Animals, Anorexia, Cytological Techniques, DNA, Bacterial/genetics, Edwardsiella tarda/genetics/immunology/*isolation & purification/physiology, Enterobacteriaceae Infections/blood/microbiology/*veterinary, Extracellular Traps/immunology, Fish Diseases/*blood/microbiology, Fishes/*microbiology, Granulocytes/ultrastructure, Kidney/cytology/microbiology/pathology, Lung/cytology/microbiology/pathology/ultrastructure, Male, Phylogeny, Polymerase Chain Reaction, Sepsis/microbiology, Testis/cytology/microbiology/pathology | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 35038 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2078.53 | Collection of Institut Pasteur (CIP 78.53) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 93078 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID46773.1 |