Agrobacterium agile (DSM 5891, ATCC 25651, A82)

Name: Agrobacterium agile (DSM 5891, ATCC 25651, A82)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13538

Type strain

Strain Designation A82

Culture col. no. DSM 5891 ATCC 25651 A82 NCIMB 2207 NBRC 15760 4 more

NCBI tax ID(s) 76979

Special Collections DSMZ JCM

History <- ATCC <- R. Ahrens, A82. Shouild be classified as a Pseudomonas sp. IAM 12615 <-- ATCC 25651 <-- R. Ahrens A82.

Links

Agrobacterium agile A82 is a Proteobacterium that was isolated from brackish water.

16S sequence

Name and taxonomic classification

SI-ID 4261

LMG 123,ATCC 25651,IAM 12615,LMG 8172,IFO 15760,NCMB 2207,DSM 5891,NCIMB 2207,CECT 4355,NBRC 15760,JCM 20686

@ref 2349

Domain Bacteria

Phylum Proteobacteria

Class Alphaproteobacteria

Order Rhizobiales

Family Rhizobiaceae

Genus Agrobacterium

Species Agrobacterium agile

Full scientific name Agrobacterium agile

Strain designation A82

Type strain yes

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2349	MARINE AGAR (DSMZ Medium 123)		Medium recipe at MediaDive	Name: MARINE AGAR (DSMZ Medium 123) Composition: NaCl 24.0 g/l Agar 15.0 g/l MgCl2 x 6 H2O 11.0 g/l Bacto peptone 5.0 g/l Na2SO4 4.0 g/l CaCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l KCl 0.7 g/l KBr 0.1 g/l SrCl2 x 6 H2O 0.04 g/l H3BO3 0.03 g/l NaSiO3 x 9 H2O 0.005 g/l NaF 0.003 g/l NH4NO3 0.002 g/l Fe(III)PO4 x 4 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2349	positive	growth	26
67770	positive	growth	25

Physiology and metabolism

Observation

67770

Observationquinones: Q-9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Brackish

Isolation

@ref	Sample type	Geographic location
2349	brackish water	Baltic Sea
67770	Brackish water	Baltic Sea

Taxonmaps

69479

Global distribution of 16S sequence D88521 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	4373
Soil Samples	958
Animal Samples	948
Plant Samples	159
Total Samples	6438

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
2349	Agrobacterium agile gene for 16S rRNA, partial sequence, strain: NBRC 15760	AB680959	1462		76979
2349	Agrobacterium agile gene for 16S rRNA, partial sequence	D88521	1348		76979

GC content

@ref	GC-content (mol%)	Method
67770	57.1	thermal denaturation, midpoint method (Tm)
67770	58	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

References

#2349	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5891
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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