Name: Komagataeibacter saccharivorans CIP 109786
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134628

Type strain:

Species: Komagataeibacter saccharivorans

Culture col. no.: CIP 109786, LMG 1582, JCM 25121, BCC 36444, CECT 7869, NCCB 29003, NRIC 0614

Strain history: CIP <- 2008, T. Uchimura, Tokyo Univ., Tokyo, Japan: strain NRIC 0614

NCBI tax ID(s): 1307941 (strain), 265959 (species)

SI-ID 14560

LMG 1582, LMD 29.3, NCCB 29003, CIP 109786, BCC 36444, CECT 7869, JCM 25121, TBRC 4566

Special Collections

Other strains from Komagataeibacter saccharivorans

Section

Komagataeibacter saccharivorans CIP 109786 is an obligate aerobe, Gram-negative bacterium of the family Acetobacteraceae.

Gram-negative
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter saccharivorans**
	Full Scientific Name (LPSN)	Komagataeibacter saccharivorans (Lisdiyanti et al. 2006) Yamada et al. 2013

	Synonym	"Komagatabacter* saccharivorans"*
	Synonym	Gluconacetobacter saccharivorans

Information on morphological and physiological properties Morphology

[Ref.: #33079]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.333

[Ref.: #33079]	Cell shape	rod-shaped

[Ref.: #33079]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33079]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #33079]

Culture medium growth

[Ref.: #33079]

Culture medium composition

expand / minimize

[Ref.: #33079]

Culture medium

CIP Medium 1

[Ref.: #33079]

Culture medium growth

[Ref.: #33079]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #33079]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #33079]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %92.327

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #33079]		nitrate ChEBI	-	reduction
[Ref.: #33079]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #33079]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #33079]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #33079]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #33079]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #33079]	12109	-	-	+	-	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Beet juice
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #33079]	Sample type/isolated from	Beet juice
[Ref.: #33079]	Country	Germany
[Ref.: #33079]	Country ISO 3 Code	DEU
[Ref.: #33079]	Continent	Europe
[Ref.: #33079]	Isolation date	1927

[Ref.: #33079]	Country	Germany
[Ref.: #33079]	Country ISO 3 Code	DEU
[Ref.: #33079]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB166740 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	42
Soil Samples	74
Animal Samples	149
Plant Samples	78
Total Samples	343

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #33079]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconacetobacter saccharivorans gene for 16S rRNA, partial sequence, strain: LMG 1582	AB166740	1386	GenBank ENA	265959 tax ID
[Ref.: #67770]	Gluconacetobacter saccharivorans gene for 16S rRNA, partial sequence, strain: JCM 25121	AB645734	1411	GenBank ENA	265959 tax ID
[Ref.: #124043]	Gluconacetobacter saccharivorans 16S rRNA gene, type strain LMG 1582T	AJ012466	1481	GenBank ENA	265959 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Komagataeibacter saccharivorans LMG 1582	GCA_003207825	contig	GenBank ENA	265959 tax ID
[Ref.: #66792]	Komagataeibacter saccharivorans strain LMG 1582	265959.6	wgs	PATRIC	265959 tax ID	*
[Ref.: #66792]	Komagataeibacter saccharivorans LMG 1582	2837595999	draft	JGI IMG/M	265959 tax ID	*

[Ref.: #67770]

GC-content

61 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter saccharivorans strain LMG 1582 PATRIC: 265959.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.359	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.327	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.984	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.251	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	60.17	no

Availability in culture collections External links

[Ref.: #33079]

Culture collection no.

CIP 109786, LMG 1582, JCM 25121, BCC 36444, CECT 7869, NCCB 29003, NRIC 0614

[Ref.: #92118]

SI-ID 14560

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Gluconacetobacter hansenii strains and proposals of Gluconacetobacter saccharivorans sp. nov. and Gluconacetobacter nataicola sp. nov.	Lisdiyanti P, Navarro RR, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/ijs.0.63252-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33079 Collection of Institut Pasteur ; Curators of the CIP; CIP 109786

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#92118

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14560.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Komagataeibacter saccharivorans strain LMG 1582

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