Name: Actinomadura yumaensis LL-C23024
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134407

Type strain:

Species: Actinomadura yumaensis

Strain Designation: LL-C23024, LL-C23024.

Culture col. no.: CIP 105436, ATCC 43060, IFO 14689, JCM 3369, NRRL 12515, DSM 108649, KCTC 9495, NBRC 14689, DSM 43931, IMSNU 22167, NBIMCC 1535

Strain history: CIP <- 1998, JCM <- NRRL <- D.P. Labeda: strain LL-C23024.

NCBI tax ID(s): 1408421 (strain), 111807 (species)

SI-ID 41623

ATCC 43060, NRRL 12515, CIP 105436, DSM 43931, IFO 14689, JCM 3369, KCTC 9495, NBRC 14689, NBIMCC 1535, DSM 108649

Section

Actinomadura yumaensis LL-C23024 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Thermomonosporaceae.

Gram-positive
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura yumaensis**
	Full Scientific Name (LPSN)	Actinomadura yumaensis Labeda et al. 1985

Information on morphological and physiological properties Morphology

[Ref.: #32706]	Gram stain	positive

[Ref.: #32706]	Cell shape	rod-shaped

[Ref.: #32706]	Motility	no

Information on culture and growth conditions Culture and growth conditions

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Culture medium

YEAST EXTRACT-STARCH AGAR(50% MARINE WATER) (DSMZ Medium 1274)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

BENNETT'S AGAR (DSMZ Medium 548)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

MEDIUM 56 - for Micromonospora purpurea

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Culture medium growth

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Culture medium composition

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Culture medium

CIP Medium 56

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #32706]		growth	37 °C
[Ref.: #32706]		growth	25-45 °C
[Ref.: #32706]	no	growth	10 °C
[Ref.: #64663]		growth	37 °C
[Ref.: #67770]		growth	37 °C

[Ref.: #32706]	Temperature range	mesophilic
[Ref.: #32706]	Temperature range	psychrophilic
[Ref.: #64663]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

[Ref.: #67770]

Name of produced compound

Antibiotic X-14868

	Salt	Tested relation		Salt conc.
[Ref.: #32706]	NaCl		growth	0-4	%
[Ref.: #32706]	NaCl	no	growth	6	%
[Ref.: #32706]	NaCl	no	growth	8	%
[Ref.: #32706]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32706]	esculin ChEBI	+	hydrolysis
[Ref.: #32706]	hippurate ChEBI	+	hydrolysis
[Ref.: #32706]	nitrate ChEBI	+	reduction
[Ref.: #32706]	nitrate ChEBI	-	respiration
[Ref.: #32706]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #32706]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #32706]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #32706]		acetoin ChEBI	-
[Ref.: #32706]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #32706]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #32706]	amylase	-
[Ref.: #32706]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32706]	caseinase	+	3.4.21.50
[Ref.: #32706]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #32706]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32706]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #32706]	gelatinase	+/-
[Ref.: #32706]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #32706]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #32706]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #32706]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #32706]	oxidase	+
[Ref.: #32706]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #32706]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #32706]	tryptophan deaminase	-
[Ref.: #32706]	tween esterase	-
[Ref.: #32706]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #32706]	1149	not determinedn.d.	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #32706]	8697	-	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64663]	Sample type/isolated from	soil
[Ref.: #64663]	Geographic location (country and/or sea, region)	Yuma County
[Ref.: #64663]	Country	USA
[Ref.: #64663]	Country ISO 3 Code	USA
[Ref.: #64663]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yuma Country, AZ
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #32706]	Sample type/isolated from	Environment, Soil
[Ref.: #32706]	Geographic location (country and/or sea, region)	Yuma, Arizona
[Ref.: #32706]	Country	United States of America
[Ref.: #32706]	Country ISO 3 Code	USA
[Ref.: #32706]	Continent	North America

[Ref.: #32706]	Geographic location (country and/or sea, region)	Yuma Country, Arizona
[Ref.: #32706]	Country	USA
[Ref.: #32706]	Country ISO 3 Code	USA
[Ref.: #32706]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ293714 (>99% sequence identity) for Actinomadura from Microbeatlas

Aquatic Samples	17
Soil Samples	211
Animal Samples	13
Plant Samples	14
Total Samples	255

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64663]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #32706]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura yumaensis partial 16S rRNA gene, strain IMSNU 22167T	AJ293714	1448	ENA	111807 tax ID
[Ref.: #64663]	Actinomadura yumaensis 16S ribosomal RNA gene, partial sequence	AF163122	1454	ENA	111807 tax ID

Availability in culture collections External links

[Ref.: #64663]

Culture collection no.

CIP 105436, ATCC 43060, IFO 14689, JCM 3369, NRRL 12515, DSM 108649, KCTC 9495, NBRC 14689, DSM 43931, IMSNU 22167, NBIMCC 1535

[Ref.: #91936]

SI-ID 41623

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	[Cloning and functional studies of the chromosomal replication origin of Actinomadura yumaensis].	Xia HY, Lin KC, Yang CJ, Qin ZJ	Wei Sheng Wu Xue Bao		2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32706 Collection of Institut Pasteur ; Curators of the CIP; CIP 105436

#64663

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108649

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91936

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41623.1 )

* These data were automatically processed and therefore are not curated

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