Actinomadura yumaensis (CIP 105436, ATCC 43060, IFO 14689)

Name: Actinomadura yumaensis (CIP 105436, ATCC 43060, IFO 14689)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134407

Type strain

Strain Designation LL-C23024, LL-C23024.

Culture col. no. CIP 105436 ATCC 43060 IFO 14689 JCM 3369 NRRL 12515 8 more

NCBI tax ID(s) 1408421 111807

Special Collections DSMZ JCM KCTC CIP

Links

Actinomadura yumaensis LL-C23024 is an obligate aerobe, mesophilic, Gram-positive prokaryote of the family Thermomonosporaceae.

Gram-positive rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 41623

ATCC 43060,NRRL 12515,CIP 105436,DSM 43931,IFO 14689,JCM 3369,KCTC 9495,NBRC 14689,NBIMCC 1535,DSM 108649

@ref 20215

Last LPSN update 2025-12-16 10:02:02

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura yumaensis

Full scientific name Actinomadura yumaensis Labeda et al. 1985

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
32706	positive	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64663	YEAST EXTRACT-STARCH AGAR(50% MARINE WATER) (DSMZ Medium 1274)	Medium recipe at MediaDive	Name: YEAST EXTRACT-STARCH AGAR (50% MARINE WATER) (DSMZ Medium 1274) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Sea water Distilled water
64663	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
64663	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
64663	BENNETT'S AGAR (DSMZ Medium 548)	Medium recipe at MediaDive	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water
64663	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
64663	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
32706	MEDIUM 56 - for Micromonospora purpurea		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (10.000g);Yeast extract (5.000 g);Starch maize (20.000 g);Calcium carbonate (1.000 g);Casamino acids (5.000 g)
32706	CIP Medium 56	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
32706	positive	growth	37	mesophilic
32706	positive	growth	25-45
32706	negative	growth	10
64663	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

32706

Oxygen toleranceobligate aerobe

Compound production

67770

CompoundAntibiotic X-14868

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32706	NaCl	positive	growth	0-4 %
32706	NaCl		growth	6 %
32706	NaCl		growth	8 %
32706	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32706	4853 ChEBI	esculin	+	hydrolysis
32706	606565 ChEBI	hippurate	+	hydrolysis
32706	17632 ChEBI	nitrate	+	reduction
32706	17632 ChEBI	nitrate	-	respiration
32706	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
32706	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32706	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
32706	15688 ChEBI	acetoin	-
32706	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
32706	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
32706	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
32706	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32706	caseinase	+	3.4.21.50
32706	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
32706	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
32706	gamma-glutamyltransferase	-	2.3.2.2
32706	gelatinase	+/-
32706	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
32706	lipase	-
68382	lipase (C 14)	-		from API zym
32706	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
32706	ornithine decarboxylase	-	4.1.1.17
32706	oxidase	+
32706	phenylalanine ammonia-lyase	-	4.3.1.24
32706	protease	+
68382	trypsin	-	3.4.21.4	from API zym
32706	tryptophan deaminase	-
32706	tween esterase	-
32706	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
32706	-	+	+	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
32706	not determinedn.d.	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
32706		Yuma Country, Arizona	USA	USA	North America
64663	soil	Yuma County	USA	USA	North America
67770	Soil	Yuma Country, AZ	USA	USA	North America
32706	Environment, Soil	Yuma, Arizona	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AJ293714 (>99% sequence identity) for Actinomadura from Microbeatlas

Aquatic Samples	17
Soil Samples	211
Animal Samples	13
Plant Samples	14
Total Samples	255

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64663	1	Risk group (German classification)
32706	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266184v1 assembly for Actinomadura yumaensis JCM 3369	contig	GCA_042661845	111807	48.74
124043	ASM4266242v1 assembly for Actinomadura yumaensis JCM 3369	scaffold	GCA_042662425	111807	43.66
124043	ASM3952112v1 assembly for Actinomadura yumaensis JCM 3369	contig	GCA_039521125	111807	9.8

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
64663	Actinomadura yumaensis 16S ribosomal RNA gene, partial sequence	AF163122	1454	111807
67770	Actinomadura yumaensis partial 16S rRNA gene, strain IMSNU 22167T	AJ293714	1448	111807
124043	Actinomadura yumaensis strain JCM 3369 16S ribosomal RNA gene, partial sequence.	MT760459	1366	111807

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Distribution of beta-lactamases in actinomycetes.	Ogawara H, Kawamura N, Kudo T, Suzuki KI, Nakase T.	Antimicrob Agents Chemother	10.1128/aac.43.12.3014	1999
	Efficacy of Cygro^® 10G (maduramicin ammonium-alpha) for turkeys.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Kos Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Ramos F, Sanz Y, Villa RE, Woutersen R, Gropp J, Rychen G, Holczknecht O, Vettori MV.	EFSA J	10.2903/j.efsa.2020.6079	2020
Genetics	[Cloning and functional studies of the chromosomal replication origin of Actinomadura yumaensis].	Xia HY, Lin KC, Yang CJ, Qin ZJ	Wei Sheng Wu Xue Bao		2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32706	Collection of Institut Pasteur ; Curators of the CIP; CIP 105436
#64663	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108649
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Actinomadura yumaensis (CIP 105436, ATCC 43060, IFO 14689)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042661845

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media