Saccharopolyspora rectivirgula (DSM 43113, ATCC 15347, CBS 100.63)

Name: Saccharopolyspora rectivirgula (DSM 43113, ATCC 15347, CBS 100.63)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13437

Type strain

Strain Designation A 94

Culture col. no. DSM 43113 ATCC 15347 CBS 100.63 CUB 134 ETH 31520 20 more

NCBI tax ID(s) 28042

Special Collections DSMZ CCUG JCM

Links

Saccharopolyspora rectivirgula A 94 is a prokaryote that was isolated from mouldy hay.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 45583

MTCC 266,ATCC 15347,NCIB 9984,CCUG 4911,CCM 3261,DSM 43113,CCUG 15939,CCM 3263,JCM 3099,CCRC 13418,IFO 12991,IMET 9545,NCIMB 9984,NRRL B-8014,IMI 104402,CBS 100.63,CECT 3218,CECT 3223,VTT E-81130,NBRC 12991,BCRC 13418,CBS 10063,NBIMCC 1473

@ref 20215

Last LPSN update 2025-12-16 09:50:05

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora rectivirgula

Full scientific name Saccharopolyspora rectivirgula (Krassilnikov and Agre 1964) Korn-Wendisch et al. 1989

Synonyms (4)

Micropolyspora faeni
Micropolyspora rectivirgula
"Thermopolyspora rectivirgula"
Faenia rectivirgula

BacDive ID	Other strains from **Saccharopolyspora rectivirgula** (7)	Type strain
13441	S. rectivirgula DSM 43747, ATCC 33515, BKM A-810, INMI 683, ... (type strain)
13438	S. rectivirgula A 1313, DSM 43114, ATCC 29034
13439	S. rectivirgula T-150, DSM 43371
13440	S. rectivirgula K 1325, DSM 43755, IMET 9553
13442	S. rectivirgula DSM 46163, CUB 404, IMET 9544
13443	S. rectivirgula 655-6, DSM 46169, IMET 9557
142970	S. rectivirgula CCUG 15955

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90.1
125439		90.4

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10776	BHI-GLUCOSE MEDIUM (DSMZ Medium 82)	Medium recipe at MediaDive	Name: BHI-GLUCOSE MEDIUM (DSMZ Medium 82) Composition: Brain heart infusion 18.5 g/l Agar 12.0 g/l Glucose 5.0 g/l Distilled water
10776	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
10776	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10776	positive	growth	55
67770	positive	growth	55

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.71

Compound production

10776

Compoundfarmers's lung disease antigen

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₄), MK-10(H₄)

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	3-chlorocatechol degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	methylglyoxal degradation	100	5 of 5
66794	resorcinol degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	acetate fermentation	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	cyanate degradation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	enterobactin biosynthesis	100	3 of 3
66794	citric acid cycle	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	purine metabolism	84.04	79 of 94
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	glycogen metabolism	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	glutathione metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	gluconeogenesis	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tryptophan metabolism	71.05	27 of 38
66794	glycolysis	70.59	12 of 17
66794	vitamin B12 metabolism	70.59	24 of 34
66794	myo-inositol biosynthesis	70	7 of 10
66794	phenol degradation	70	14 of 20
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	histidine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	non-pathway related	68.42	26 of 38
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	oxidative phosphorylation	64.84	59 of 91
66794	lipid metabolism	64.52	20 of 31
66794	tyrosine metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	degradation of hexoses	61.11	11 of 18
66794	gallate degradation	60	3 of 5
66794	starch degradation	60	6 of 10
66794	3-phenylpropionate degradation	60	9 of 15
66794	lipoate biosynthesis	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	carotenoid biosynthesis	59.09	13 of 22
66794	arginine metabolism	58.33	14 of 24
66794	degradation of pentoses	57.14	16 of 28
66794	polyamine pathway	56.52	13 of 23
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	cysteine metabolism	55.56	10 of 18
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	allantoin degradation	55.56	5 of 9
66794	metabolism of disaccharids	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	cyclohexanol degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	glycogen biosynthesis	50	2 of 4
66794	vitamin E metabolism	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	quinate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	bacilysin biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	degradation of sugar acids	40	10 of 25
66794	arachidonate biosynthesis	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	cholesterol biosynthesis	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	sulfoquinovose degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	arachidonic acid metabolism	22.22	4 of 18
66794	chlorophyll metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fungi
#Host	#Plants
#Host Body Product	#Plant

Isolation

@ref	Sample type
10776	mouldy hay
67770	Hay

Taxonmaps

69479

Global distribution of 16S sequence JN010256 (>99% sequence identity) for Saccharopolyspora rectivirgula subclade from Microbeatlas

Aquatic Samples	522
Soil Samples	2203
Animal Samples	3502
Plant Samples	598
Total Samples	6825

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
10776	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71075v1 assembly for Saccharopolyspora rectivirgula DSM 43113	contig	GCA_000710755	28042.5	2609460237	28042	69.73

Genome browser: GCA_000710755

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Saccharopolyspora rectivirgula 16S ribosomal RNA gene, partial sequence	AF061976	231		28042
20218	Saccharopolyspora rectivirgula strain DSM 43113 16S ribosomal RNA gene, partial sequence	JN010256	1507		28042

GC content

@ref	GC-content (mol%)	Method
67770	63	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Saccharopolyspora rectivirgula DSM 43113
NCBI: GCA_000710755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	67.80	no
125439	motility	BacteriaNetⓘ	no	69.60	no
125439	gram_stain	BacteriaNetⓘ	positive	90.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharopolyspora rectivirgula strain DSM 43113
PATRIC: 28042.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.97	no
125438	anaerobic	anaerobicⓘ	no	95.06	no
125438	spore-forming	spore-formingⓘ	yes	74.48	no
125438	thermophilic	thermophileⓘ	no	68.35	yes
125438	aerobic	aerobicⓘ	yes	91.71	no
125438	flagellated	motile2+ⓘ	no	90.10	no

Literature

Title	Authors	Journal	DOI	Year
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177^T isolated from a marine sponge.	Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Ruckert C.	Stand Genomic Sci	10.1186/s40793-016-0213-3	2016
Hypersensitivity pneumonitis onset and severity is regulated by CD103 dendritic cell expression.	Bernatchez E, Langlois A, Brassard J, Flamand N, Marsolais D, Blanchet MR.	PLoS One	10.1371/journal.pone.0179678	2017
Draft Genome Sequence of the Principal Etiological Agent of Farmer's Lung Disease, Saccharopolyspora rectivirgula.	Barrera C, Valot B, Rognon B, Zaugg C, Monod M, Millon L	Genome Announc	10.1128/genomeA.01340-14	2014

References

#10776	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43113
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora rectivirgula (DSM 43113, ATCC 15347, CBS 100.63)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000710755

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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