Name: Saccharopolyspora rectivirgula A 94
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13437

Type strain:

Species: Saccharopolyspora rectivirgula

Strain Designation: A 94

Culture col. no.: DSM 43113, ATCC 15347, CBS 100.63, CUB 134, ETH 31520, JCM 3099, KCC A-0099, NCIB 9984, BCRC 13418, CCM 3263, CCUG 15939, CCUG 4911, CECT 3218, CECT 3223, CMI 104402, IFO 12991, IMET 9545, MTCC 266, NBIMCC 1473, NBRC 12991, NCIMB 9984, NRRL B-8014, PCM 2250, VTT E-81130

Strain history: KCC A-0099 <-- T. Cross A 94 (CUB 134).

NCBI tax ID(s): 28042 (species)

SI-ID 45583

ATCC 15347, NCIB 9984, CCUG 4911, CCM 3261, DSM 43113, CCUG 15939, CCM 3263, JCM 3099, CCRC 13418, IFO 12991, IMET 9545, NCIMB 9984, NRRL B-8014, IMI 104402, CBS 100.63, CECT 3218, CECT 3223, VTT E-81130, NBRC 12991, BCRC 13418, CBS 10063, NBIMCC 1473

Other strains from Saccharopolyspora rectivirgula

S. rectivirgula DSM 43747, ATCC 33515, BKM A-810, ... (type strain)
S. rectivirgula A 1313, DSM 43114, ATCC 29034
S. rectivirgula T-150, DSM 43371
S. rectivirgula K 1325, DSM 43755, IMET 9553
S. rectivirgula DSM 46163, CUB 404, IMET 9544
S. rectivirgula 655-6, DSM 46169, IMET 9557
S. rectivirgula CCUG 15955

Section

Saccharopolyspora rectivirgula A 94 is a spore-forming, thermophilic, Gram-positive human pathogen that was isolated from mouldy hay.

Gram-positive
spore-forming
human pathogen
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora rectivirgula**
	Full Scientific Name (LPSN)	Saccharopolyspora rectivirgula (Krassilnikov and Agre 1964) Korn-Wendisch et al. 1989

	Synonym	Micropolyspora faeni
	Synonym	"Thermopolyspora* rectivirgula"*
	Synonym	Micropolyspora rectivirgula
	Synonym	Faenia rectivirgula

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10776]

Culture medium

BHI-GLUCOSE MEDIUM (DSMZ Medium 82)

[Ref.: #10776]

Culture medium growth

[Ref.: #10776]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10776]

Culture medium composition

expand / minimize

[Ref.: #10776]

Culture medium

ALLANTOIN MINERAL MEDIUM (DSMZ Medium 6)

[Ref.: #10776]

Culture medium growth

[Ref.: #10776]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10776]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10776]			growth	55 °C
[Ref.: #67770]			growth	55 °C

[Ref.: #10776]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %92
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10776]

Name of produced compound

farmers's lung disease antigen

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₄), MK-10(H₄)

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ethylmalonyl-CoA pathway	100	5 of 5
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	selenocysteine biosynthesis	83.33	5 of 6
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	tryptophan metabolism	71.05	27 of 38
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	vitamin B12 metabolism	70.59	24 of 34
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	phenol degradation	70	14 of 20
[Ref.: #66794]	isoprenoid biosynthesis	69.23	18 of 26
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	starch degradation	60	6 of 10
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	carotenoid biosynthesis	59.09	13 of 22
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	degradation of sugar acids	40	10 of 25
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10776]	Sample type/isolated from	mouldy hay

[Ref.: #67770]	Sample type/isolated from	Hay
* marker position based on {}

Isolation sources categories

#Host	#Fungi	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body Product	#Plant	#Straw

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN010256 (>99% sequence identity) for Saccharopolyspora rectivirgula subclade from Microbeatlas

Aquatic Samples	522
Soil Samples	2203
Animal Samples	3502
Plant Samples	598
Total Samples	6825

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10776]	Pathogenicity (human)	yes, in single cases
[Ref.: #10776]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Saccharopolyspora rectivirgula 16S ribosomal RNA gene, partial sequence	AF061976	231	ENA	28042 tax ID	*
[Ref.: #20218]	Saccharopolyspora rectivirgula strain DSM 43113 16S ribosomal RNA gene, partial sequence	JN010256	1507	ENA	28042 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saccharopolyspora rectivirgula DSM 43113	GCA_000710755	contig	GenBank	28042 tax ID
[Ref.: #66792]	Saccharopolyspora rectivirgula strain DSM 43113	28042.5	wgs	PATRIC	28042 tax ID	*
[Ref.: #66792]	Saccharopolyspora rectivirgula DSM 43113	2609460237	draft	JGI IMG/M	28042 tax ID	*

[Ref.: #67770]

GC-content

63 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharopolyspora rectivirgula strain DSM 43113 PATRIC: 28042.5
[Ref.: #69481]	spore-forming	yes	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharopolyspora rectivirgula strain DSM 43113 PATRIC: 28042.5
[Ref.: #69480]	motile	no	93.944	no
[Ref.: #69480]	gram-positive	yes	88.876	no
[Ref.: #69480]	anaerobic	no	96.727	no
[Ref.: #69480]	halophile	yes	56.557	no
[Ref.: #69480]	spore-forming	yes	77.497	no
[Ref.: #69480]	glucose-util	yes	86.679	no
[Ref.: #69480]	flagellated	no	97.99	no
[Ref.: #69480]	aerobic	yes	87.383	no
[Ref.: #69480]	thermophile	yes	84.524	yes
[Ref.: #69480]	glucose-ferment	no	92.177	no

Availability in culture collections External links

[Ref.: #10776]

Culture collection no.

DSM 43113, ATCC 15347, CBS 100.63, CUB 134, ETH 31520, JCM 3099, KCC A-0099, NCIB 9984, BCRC 13418, CCM 3263, CCUG 15939, CCUG 4911, CECT 3218, CECT 3223, CMI 104402, IFO 12991, IMET 9545, MTCC 266, NBIMCC 1473, NBRC 12991, NCIMB 9984, NRRL B-8014, PCM 2250, VTT E-81130

[Ref.: #82629]

SI-ID 45583

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of the Principal Etiological Agent of Farmer's Lung Disease, Saccharopolyspora rectivirgula.	Barrera C, Valot B, Rognon B, Zaugg C, Monod M, Millon L	Genome Announc	10.1128/genomeA.01340-14	2014	*

References

#10776

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43113

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82629

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45583.1 )

* These data were automatically processed and therefore are not curated

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Saccharopolyspora rectivirgula strain DSM 43113

Saccharopolyspora rectivirgula strain DSM 43113

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