Name: Streptomyces himastatinicus DSM 41914
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134317

Type strain:

Species: Streptomyces himastatinicus

Culture col. no.: DSM 41914, ATCC 53653

NCBI tax ID(s): 457427 (strain), 998084 (species)

SI-ID 43393

ATCC 53653, DSM 41914

Other strains from Streptomyces himastatinicus

S. himastatinicus STI25001(IMET), H109,

Section

Streptomyces himastatinicus DSM 41914 is a spore-forming, ovoid-shaped bacterium that builds an aerial mycelium and was isolated from soil.

ovoid-shaped
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces himastatinicus**
	Full Scientific Name (LPSN)	Streptomyces himastatinicus Kumar and Goodfellow 2008

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #28609]	Cell length	0.5-1.2 µm

[Ref.: #28609]	Cell width	0.5-0.7 µm

[Ref.: #28609]	Cell shape	ovoid-shaped

[Ref.: #69307]	Colony color	Grey beige (1019)
[Ref.: #69307]	Cultivation medium used	ISP 5

[Ref.: #69307]	Colony color	Green brown (8000)
[Ref.: #69307]	Cultivation medium used	ISP 7

[Ref.: #69307]	Colony color	Colorless
[Ref.: #69307]	Cultivation medium used	ISP 4

[Ref.: #69307]	Colony color	Ivory (1014)
[Ref.: #69307]	Cultivation medium used	suter without tyrosine

[Ref.: #69307]	Colony color	Ochre brown (8001)
[Ref.: #69307]	Cultivation medium used	suter with tyrosine

[Ref.: #69307]	Colony color	Sand yellow (1002)
[Ref.: #69307]	Cultivation medium used	ISP 2

[Ref.: #69307]	Colony color	Sand yellow (1002)
[Ref.: #69307]	Cultivation medium used	ISP 6

[Ref.: #32383]	Pigment production	no
[Ref.: #69307]	Pigment production	yes
[Ref.: #69307]	Pigment name	Melanin
[Ref.: #69307]	Pigment production	yes
[Ref.: #69307]	Pigmentation color	Sand yellow (1002), grey beige (1019), green brown (8000), ochre brown (8001), ivory (1014)
[Ref.: #69307]	Pigment name	soluble pigment

[Ref.: #69307]	Multicellular complex forming ability	yes
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Medium Name (multicellularity)	ISP 2

[Ref.: #69307]	Multicellular complex forming ability	yes
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Multicellular complex color	Mouse grey (7005), traffic grey a (7042), signal white (9003)
[Ref.: #69307]	Medium Name (multicellularity)	ISP 3

[Ref.: #69307]	Multicellular complex forming ability	yes
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Multicellular complex color	Grey white (9002)
[Ref.: #69307]	Medium Name (multicellularity)	ISP 4

[Ref.: #69307]	Multicellular complex forming ability	yes
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Medium Name (multicellularity)	ISP 5

[Ref.: #69307]	Multicellular complex forming ability	no
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Medium Name (multicellularity)	ISP 6

[Ref.: #69307]	Multicellular complex forming ability	yes
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Multicellular complex color	Stone grey (7030)
[Ref.: #69307]	Medium Name (multicellularity)	ISP 7

[Ref.: #69307]	Multicellular complex forming ability	yes
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Multicellular complex color	Grey white (9002)
[Ref.: #69307]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69307]	Multicellular complex forming ability	yes
[Ref.: #69307]	Multicellular complex name	Aerial mycelium
[Ref.: #69307]	Multicellular complex color	Light ivory (1015)
[Ref.: #69307]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69307]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69307]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69307]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69307]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #28609]	no	growth	40 °C
[Ref.: #28609]	no	growth	4 °C
[Ref.: #28609]		growth	10-37 °C
[Ref.: #32383]		growth	10-37 °C

[Ref.: #28609]	Temperature range	thermophilic
[Ref.: #28609]	Temperature range	psychrophilic

	Kind of pH		pH
[Ref.: #32383]		growth	05-10
[Ref.: #28609]		growth	5-10
[Ref.: #28609]	no	growth	4
[Ref.: #28609]	no	growth	11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32383]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #32383]	NaCl		growth	<8	%
[Ref.: #28609]	NaCl	no	growth	10	%(w/v)
[Ref.: #69307]	NaCl		growth	0-2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28609]	2-aminopentanoic acid ChEBI	-	nitrogen source
[Ref.: #28609]	amygdalin ChEBI	-	carbon source
[Ref.: #69307]	arabinose ChEBI	+/-	growth
[Ref.: #28609]	aspartate ChEBI	-	nitrogen source
[Ref.: #28609]	butane-1,4-diol ChEBI	+	carbon source
[Ref.: #28609]	cellobiose ChEBI	-	carbon source
[Ref.: #28609]	cellulose ChEBI	-	degradation
[Ref.: #69307]	cellulose ChEBI	-	growth
[Ref.: #28609]	chitin ChEBI	-	degradation
[Ref.: #28609]	D-arabinose ChEBI	-	carbon source
[Ref.: #28609]	D-fructose ChEBI	+	carbon source
[Ref.: #28609]	D-galactose ChEBI	+	carbon source
[Ref.: #28609]	D-glucose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #28609]	D-mannitol ChEBI	+	carbon source
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #28609]	D-mannose ChEBI	+	carbon source
[Ref.: #28609]	D-ribose ChEBI	+	carbon source
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #28609]	D-sorbitol ChEBI	-	carbon source
[Ref.: #28609]	D-xylose ChEBI	+	carbon source
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #28609]	dna ChEBI	-	degradation
[Ref.: #32383]	esculin ChEBI	+	hydrolysis
[Ref.: #28609]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #32383]	fructose ChEBI	+	carbon source
[Ref.: #69307]	fructose ChEBI	+/-	growth
[Ref.: #28609]	galactitol ChEBI	-	carbon source
[Ref.: #32383]	galactose ChEBI	+	carbon source
[Ref.: #28609]	gamma-aminobutyric acid ChEBI	-	nitrogen source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #32383]	glucose ChEBI	+	carbon source
[Ref.: #69307]	glucose ChEBI	+	growth
[Ref.: #32383]	glycerol ChEBI	+	carbon source
[Ref.: #28609]	glycerol ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69307]	inositol ChEBI	+	growth
[Ref.: #28609]	L-arginine ChEBI	+	nitrogen source
[Ref.: #28609]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #28609]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #28609]	L-histidine ChEBI	+	nitrogen source
[Ref.: #28609]	L-isoleucine ChEBI	+	nitrogen source
[Ref.: #28609]	L-leucine ChEBI	-	nitrogen source
[Ref.: #28609]	L-ornithine ChEBI	+	nitrogen source
[Ref.: #28609]	L-proline ChEBI	+	nitrogen source
[Ref.: #28609]	L-rhamnose ChEBI	+	carbon source
[Ref.: #28609]	L-threonine ChEBI	+	nitrogen source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32383]	maltose ChEBI	+	carbon source
[Ref.: #28609]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32383]	mannitol ChEBI	+	carbon source
[Ref.: #32383]	mannose ChEBI	+	carbon source
[Ref.: #69307]	mannose ChEBI	+	growth
[Ref.: #28609]	methanol ChEBI	-	carbon source
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #28609]	norleucine ChEBI	-	nitrogen source
[Ref.: #28609]	pectin ChEBI	-	degradation
[Ref.: #28609]	propanol ChEBI	-	carbon source
[Ref.: #32383]	raffinose ChEBI	+	carbon source
[Ref.: #28609]	raffinose ChEBI	+	carbon source
[Ref.: #69307]	raffinose ChEBI	+/-	growth
[Ref.: #32383]	rhamnose ChEBI	+	carbon source
[Ref.: #69307]	rhamnose ChEBI	+	growth
[Ref.: #32383]	ribose ChEBI	+	carbon source
[Ref.: #28609]	rna ChEBI	-	degradation
[Ref.: #28609]	starch ChEBI	+	degradation
[Ref.: #32383]	sucrose ChEBI	+	carbon source
[Ref.: #28609]	sucrose ChEBI	+	carbon source
[Ref.: #69307]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #32383]	trehalose ChEBI	+	carbon source
[Ref.: #28609]	trehalose ChEBI	+	carbon source
[Ref.: #28609]	tributyrin ChEBI	-	degradation
[Ref.: #28609]	tween 40 ChEBI	+	degradation
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #28609]	xanthine ChEBI	-	degradation
[Ref.: #28609]	xylan ChEBI	-	degradation
[Ref.: #32383]	xylose ChEBI	+	carbon source
[Ref.: #69307]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #28609]	gentamicin ChEBI	yes	8	µg/mL
[Ref.: #28609]	kanamycin ChEBI	yes	8	µg/mL
[Ref.: #28609]	neomycin sulfate ChEBI	yes	8	µg/mL
[Ref.: #28609]	streptomycin ChEBI	yes	8	µg/mL
[Ref.: #28609]	tobramycin ChEBI	yes	8	µg/mL

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69307]	3800	-	-	-	+	-	+	-	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69307]	5984	not determinedn.d.	+	-	-	+/-	+	+	+/-	+/-	+/-	+	+	-	+	-	+/-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32383]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28609]	16S rRNA gene sequence	EF408736		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces himastatinicus ATCC 53653	GCA_000158915	scaffold	GenBank	457427 tax ID	*
[Ref.: #66792]	Streptomyces himastatinicus ATCC 53653	457427.3	wgs	PATRIC	457427 tax ID	*
[Ref.: #66792]	Streptomyces himastatinicus ATCC 53653	2582581769	draft	JGI IMG/M	457427 tax ID	*
[Ref.: #66792]	Streptomyces himastatinicus ATCC 53653	2563366670	draft	JGI IMG/M	457427 tax ID	*
[Ref.: #66792]	Streptomyces hygroscopicus ATCC 53653	645058857	draft	JGI IMG/M	457427 tax ID	*

[Ref.: #28609]

GC-content

71.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces himastatinicus ATCC 53653 ATCC 53653 NCBI: GCA_000158915.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces himastatinicus ATCC 53653 ATCC 53653 NCBI: GCA_000158915.1
[Ref.: #69480]	motile	no	91.724	no
[Ref.: #69480]	flagellated	no	97.642	no
[Ref.: #69480]	gram-positive	yes	88.699	no
[Ref.: #69480]	anaerobic	no	99.228	no
[Ref.: #69480]	aerobic	yes	93.369	no
[Ref.: #69480]	halophile	no	87.712	yes
[Ref.: #69480]	spore-forming	yes	94.289	yes
[Ref.: #69480]	thermophile	no	98.478	no
[Ref.: #69480]	glucose-util	yes	91.109	yes
[Ref.: #69480]	glucose-ferment	no	88.994	yes

Availability in culture collections External links

[Ref.: #32383]

Culture collection no.

DSM 41914, ATCC 53653

[Ref.: #91892]

SI-ID 43393

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces amphotericinicus sp. nov., an amphotericin-producing actinomycete isolated from the head of an ant (Camponotus japonicus Mayr).	Cao T, Mu S, Lu C, Zhao S, Li D, Yan K, Xiang W, Liu C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002382	2017	*
Phylogeny	Five new members of the Streptomyces violaceusniger 16S rRNA gene clade: Streptomyces castelarensis sp. nov., comb. nov., Streptomyces himastatinicus sp. nov., Streptomyces mordarskii sp. nov., Streptomyces rapamycinicus sp. nov. and Streptomyces ruanii sp. nov.	Kumar Y, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.65408-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28609

IJSEM 1369 2008 ( DOI 10.1099/ijs.0.65408-0 , PubMed 18523180 )

#32383

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28609 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69307

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91892

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43393.1 )

#28609

IJSEM 1369 2008 ( DOI 10.1099/ijs.0.65408-0 , PubMed 18523180 )

* These data were automatically processed and therefore are not curated

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Streptomyces himastatinicus ATCC 53653 ATCC 53653

Streptomyces himastatinicus ATCC 53653 ATCC 53653

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