Name: Rubritalea tangerina YM27-005
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134287

Type strain:

Species: Rubritalea tangerina

Strain Designation: YM27-005

Culture col. no.: MBIC 08282, KCTC 12907, NBRC 104205

Strain history: <- JW Yoon, Tokyo Univ., Japan

NCBI tax ID(s): 430798 (species)

Section

Rubritalea tangerina YM27-005 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from marine animals.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Verrucomicrobiota*
	Class	*Verrucomicrobiia*
	Order	*Verrucomicrobiales*
	Family	*Rubritaleaceae*
	Genus	*Rubritalea*
	Species	**Rubritalea tangerina**
	Full Scientific Name (LPSN)	Rubritalea tangerina Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32276]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32276]	Cell length	1.25 µm

[Ref.: #32276]	Cell width	0.65 µm

[Ref.: #32276]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32276]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #32276]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32276]	growth	15-37 °C
[Ref.: #32276]	optimum	33.5 °C
[Ref.: #67771]	growth	30-37 °C

[Ref.: #32276]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32276]			optimum	7.5
[Ref.: #32276]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32276]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32276]		NaCl		growth	<9	%
[Ref.: #32276]		NaCl		optimum	4.5	%

[Ref.: #67771]

Observation

quinones: MK-8, MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32276]	citrate ChEBI	+	carbon source
[Ref.: #32276]	fucose ChEBI	+	carbon source
[Ref.: #32276]	mannose ChEBI	+	carbon source
[Ref.: #32276]	nitrate ChEBI	+	reduction
[Ref.: #32276]	succinate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32276]	acid phosphatase	+	3.1.3.2
[Ref.: #32276]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32276]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32276]	Sample type/isolated from	marine animals

[Ref.: #67771]	Sample type/isolated from	From visceral specimen of an unidentified sea hare
[Ref.: #67771]	Geographic location (country and/or sea, region)	Himetsu, Sado, Niigata
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	-	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32276]	Rubritalea tangerina gene for 16S rRNA, partial sequence	AB297806	1489	GenBank	430798 tax ID

[Ref.: #32276]

GC-content

50.3 mol%

Availability in culture collections External links

[Ref.: #32276]

Culture collection no.

MBIC 08282, KCTC 12907, NBRC 104205

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rubritalea spongiae sp. nov. and Rubritalea tangerina sp. nov., two carotenoid- and squalene-producing marine bacteria of the family Verrucomicrobiaceae within the phylum 'Verrucomicrobia', isolated from marine animals.	Yoon J, Matsuo Y, Matsuda S, Adachi K, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65243-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32276

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28516 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#28516

IJSEM 2337 2007 ( DOI 10.1099/ijs.0.65243-0 , PubMed 17911307 )

* These data were automatically processed and therefore are not curated

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