Name: Paracoccus marinus KKL-A5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 134263

Type strain:

Species: Paracoccus marinus

Strain Designation: KKL-A5

Culture col. no.: NBRC 100637, CIP 108500

Strain history: CIP <- 2004, NBRC <- S.T. Khan, Chiba, Japan: strain KKL-A5, "Paracoccus schoinia"

NCBI tax ID(s): 288426 (species)

SI-ID 133020

LMG 22796, NBRC 100637, CIP 108500, LMG 24667

Special Collections

Other strains from Paracoccus marinus

Section

Paracoccus marinus KKL-A5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Environment, Sea water.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus marinus**
	Full Scientific Name (LPSN)	Paracoccus marinus Khan et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32195]	Gram stain	negative
[Ref.: #120819]	Gram stain	negative

[Ref.: #32195]	Cell length	1 µm

[Ref.: #32195]	Cell width	0.65 µm

[Ref.: #32195]	Cell shape	rod-shaped
[Ref.: #120819]	Cell shape	rod-shaped

[Ref.: #32195]	Motility	no
[Ref.: #120819]	Motility	no

[Ref.: #32195]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #40007]

Culture medium

Marine agar (MA)

[Ref.: #40007]

Culture medium growth

[Ref.: #40007]

Culture medium composition

expand / minimize

[Ref.: #120819]

Culture medium

CIP Medium 13

[Ref.: #120819]

Culture medium growth

[Ref.: #120819]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #32195]		growth	10-35 °C
[Ref.: #32195]		optimum	30 °C
[Ref.: #40007]		growth	22 °C
[Ref.: #120819]		growth	22-25 °C
[Ref.: #120819]	no	growth	5 °C
[Ref.: #120819]	no	growth	10 °C
[Ref.: #120819]	no	growth	30 °C
[Ref.: #120819]	no	growth	37 °C
[Ref.: #120819]	no	growth	41 °C

	pH	Kind of pH		pH
[Ref.: #32195]			optimum	7.5
[Ref.: #32195]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32195]

Oxygen tolerance

aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #32195]	NaCl		growth	<5	%
[Ref.: #32195]	NaCl		optimum	2.5	%
[Ref.: #120819]	NaCl		growth	2-4	%
[Ref.: #120819]	NaCl	no	growth	0	%
[Ref.: #120819]	NaCl	no	growth	6	%
[Ref.: #120819]	NaCl	no	growth	8	%
[Ref.: #120819]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32195]	asparagine ChEBI	+	carbon source
[Ref.: #120819]	esculin ChEBI	-	hydrolysis
[Ref.: #32195]	fructose ChEBI	+	carbon source
[Ref.: #32195]	galactose ChEBI	+	carbon source
[Ref.: #32195]	glucose ChEBI	+	carbon source
[Ref.: #32195]	lactate ChEBI	+	carbon source
[Ref.: #120819]	nitrate ChEBI	-	reduction
[Ref.: #120819]	nitrite ChEBI	-	reduction
[Ref.: #32195]	pyruvate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #120819]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120819]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120819]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120819]	amylase	-
[Ref.: #120819]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120819]	caseinase	-	3.4.21.50
[Ref.: #32195]	catalase	+	1.11.1.6
[Ref.: #120819]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32195]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120819]	gelatinase	-
[Ref.: #120819]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120819]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120819]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120819]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120819]	oxidase	+
[Ref.: #120819]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #120819]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120819]	tryptophan deaminase	-
[Ref.: #120819]	tween esterase	+
[Ref.: #120819]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120819]	11232	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #120819]	Sample type/isolated from	Environment, Sea water
[Ref.: #120819]	Geographic location (country and/or sea, region)	Chiba
[Ref.: #120819]	Country	Japan
[Ref.: #120819]	Country ISO 3 Code	JPN
[Ref.: #120819]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB185957 (>99% sequence identity) for Paracoccus from Microbeatlas

Aquatic Samples	415
Soil Samples	44
Animal Samples	1497
Plant Samples	167
Total Samples	2123

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120819]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32195]	Paracoccus marinus gene for 16S ribosomal RNA, partial sequence, strain: KKL-A5	AB185957	1415	GenBank ENA	288426 tax ID
[Ref.: #124043]	Paracoccus marinus NBRC 100637 gene for 16S rRNA, partial sequence.	LC752394	561	GenBank ENA	288426 tax ID	*
[Ref.: #124043]	Paracoccus marinus gene for 16S rRNA, partial sequence, strain: NBRC 100637.	AB681209	1386	GenBank ENA	288426 tax ID	*

[Ref.: #32195]

GC-content

69 mol%

Availability in culture collections External links

[Ref.: #32195]

Culture collection no.

NBRC 100637, CIP 108500

[Ref.: #91850]

SI-ID 133020

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus cavernae sp. nov., isolated from a show cave.	Dominguez-Monino I, Jurado V, Hermosin B, Saiz-Jimenez C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001018	2016	*
Phylogeny	Paracoccus aestuarii sp. nov., isolated from tidal flat sediment.	Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.65759-0	2009	*
Phylogeny	Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated from coastal seawater in Tokyo Bay.	Khan ST, Takaichi S, Harayama S	Int J Syst Evol Microbiol	10.1099/ijs.0.65103-0	2008	*
Phylogeny	Paracoccus aeridis sp. nov., an indole-producing bacterium isolated from the rhizosphere of an orchid, Aerides maculosa.	Rai A, N S, G S, A S, G D, Ch S, Ch V R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003962	2020	*
Phylogeny	Paracoccus sordidisoli sp. nov., isolated from an agricultural field contaminated with hexachlorocyclohexane isomers.	Singh AK, Kohli P, Mahato NK, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.002289	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32195

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28437 (see below)

#40007 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91850

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID133020.1 )

#120819 Collection of Institut Pasteur ; Curators of the CIP; CIP 108500

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28437

IJSEM 383 2008 ( DOI 10.1099/ijs.0.65103-0 , PubMed 18218935 )

* These data were automatically processed and therefore are not curated

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