Paracoccus marinus (NBRC 100637, CIP 108500, KKL-A5)

Name: Paracoccus marinus (NBRC 100637, CIP 108500, KKL-A5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134263

Type strain

Strain Designation KKL-A5

Culture col. no. NBRC 100637 CIP 108500 KKL-A5

NCBI tax ID(s) 288426

Special Collections CIP Literature strains

History CIP <- 2004, NBRC <- S.T. Khan, Chiba, Japan: strain KKL-A5, "Paracoccus schoinia"

Links

Paracoccus marinus KKL-A5 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Environment, Sea water.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133020

LMG 22796,NBRC 100637,CIP 108500,LMG 24667

@ref 20215

Last LPSN update 2026-02-09 11:32:09

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Paracoccus

Species Paracoccus marinus

Full scientific name Paracoccus marinus Khan et al. 2008

BacDive ID	Other strains from **Paracoccus marinus** (2)	Type strain
140021	P. marinus C1_1, DSM 103983
159545	P. marinus Fh040319_C11, DSM 109536

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32195	negative	1 µm	0.65 µm	rod-shaped
120819	negative			rod-shaped

Pigmentation

32195

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
40007	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120819	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
32195	positive	growth	10-35
32195	positive	optimum	30
40007	positive	growth	22
120819	positive	growth	22-25
120819	negative	growth	5
120819	negative	growth	10
120819	negative	growth	30
120819	negative	growth	37
120819	negative	growth	41

Culture pH

@ref	Ability	Type	PH	PH range
32195	positive	optimum	7.5
32195	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

32195

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32195	NaCl	positive	growth	<5 %
32195	NaCl	positive	optimum	2.5 %
120819	NaCl	positive	growth	2-4 %
120819	NaCl		growth	0 %
120819	NaCl		growth	6 %
120819	NaCl		growth	8 %
120819	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32195	22653 ChEBI	asparagine	+	carbon source
120819	4853 ChEBI	esculin	-	hydrolysis
32195	28757 ChEBI	fructose	+	carbon source
32195	28260 ChEBI	galactose	+	carbon source
32195	17234 ChEBI	glucose	+	carbon source
32195	24996 ChEBI	lactate	+	carbon source
120819	17632 ChEBI	nitrate	-	reduction
120819	16301 ChEBI	nitrite	-	reduction
32195	15361 ChEBI	pyruvate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120819	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
120819	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120819	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120819	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120819	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120819	caseinase	-	3.4.21.50
32195	catalase	+	1.11.1.6
120819	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32195	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120819	gelatinase	-
120819	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120819	lipase	-
68382	lipase (C 14)	-		from API zym
120819	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120819	ornithine decarboxylase	-	4.1.1.17
120819	oxidase	+
120819	phenylalanine ammonia-lyase	-	4.3.1.24
120819	protease	-
68382	trypsin	-	3.4.21.4	from API zym
120819	tryptophan deaminase	-
120819	tween esterase	+
120819	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120819	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
120819	Environment, Sea water	Chiba	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB185957 (>99% sequence identity) for Paracoccus from Microbeatlas

Aquatic Samples	415
Soil Samples	44
Animal Samples	1497
Plant Samples	167
Total Samples	2123

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120819	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID
124043	ASM3016105v1 assembly for Paracoccus marinus NBRC 100637	scaffold	GCA_030161055	288426.6	288426

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
32195	Paracoccus marinus gene for 16S ribosomal RNA, partial sequence, strain: KKL-A5	AB185957	1415	288426
124043	Paracoccus marinus gene for 16S rRNA, partial sequence, strain: NBRC 100637.	AB681209	1386	288426
124043	Paracoccus marinus NBRC 100637 gene for 16S rRNA, partial sequence.	LC752394	561	288426

GC content

32195

GC-content (mol%)69

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus cavernae sp. nov., isolated from a show cave.	Dominguez-Monino I, Jurado V, Hermosin B, Saiz-Jimenez C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001018	2016
Phylogeny	Paracoccus aestuarii sp. nov., isolated from tidal flat sediment.	Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.65759-0	2009
Phylogeny	Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated from coastal seawater in Tokyo Bay.	Khan ST, Takaichi S, Harayama S	Int J Syst Evol Microbiol	10.1099/ijs.0.65103-0	2008
Phylogeny	Paracoccus aeridis sp. nov., an indole-producing bacterium isolated from the rhizosphere of an orchid, Aerides maculosa.	Rai A, N S, G S, A S, G D, Ch S, Ch V R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003962	2020
Phylogeny	Paracoccus sordidisoli sp. nov., isolated from an agricultural field contaminated with hexachlorocyclohexane isomers.	Singh AK, Kohli P, Mahato NK, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.002289	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28437	IJSEM 383 2008 ( DOI 10.1099/ijs.0.65103-0 , PubMed 18218935 )
#32195	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28437
#40007	; Curators of the CIP;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120819	Collection of Institut Pasteur ; Curators of the CIP; CIP 108500
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paracoccus marinus (NBRC 100637, CIP 108500, KKL-A5)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030161055

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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