Strain identifier
BacDive ID: 134263
Type strain: 
Species: Paracoccus marinus
Strain Designation: KKL-A5
NCBI tax ID(s): 288426 (species)
version 7.1 (current version)
General
@ref: 32195
BacDive-ID: 134263
keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Paracoccus marinus KKL-A5 is an aerobe, Gram-negative, rod-shaped bacterium of the family Rhodobacteraceae.
NCBI tax id
- NCBI tax id: 288426
- Matching level: species
doi: 10.13145/bacdive134263.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Rhodobacteraceae
- genus: Paracoccus
- species: Paracoccus marinus
- full scientific name: Paracoccus marinus Khan et al. 2008
@ref: 32195
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Paracoccus
species: Paracoccus marinus
strain designation: KKL-A5
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 32195 | negative | 1 µm | 0.65 µm | rod-shaped | no | |
| 69480 | negative | 99.114 |
pigmentation
- @ref: 32195
- production: yes
Culture and growth conditions
culture medium
- @ref: 40007
- name: Marine agar (MA)
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32195 | positive | growth | 10-35 | |
| 32195 | positive | optimum | 30 | mesophilic |
| 40007 | positive | growth | 22 | psychrophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32195 | positive | growth | 06-09 | alkaliphile |
| 32195 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 32195
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.362
halophily
| @ref | salt | growth | tested relation | concentration | halophily level | confidence |
|---|---|---|---|---|---|---|
| 32195 | NaCl | positive | growth | <5 % | ||
| 32195 | NaCl | positive | optimum | 2.5 % | ||
| 69480 | non-halophilic | 98.26 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32195 | 22653 | asparagine | + | carbon source |
| 32195 | 28757 | fructose | + | carbon source |
| 32195 | 28260 | galactose | + | carbon source |
| 32195 | 17234 | glucose | + | carbon source |
| 32195 | 24996 | lactate | + | carbon source |
| 32195 | 15361 | pyruvate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32195 | catalase | + | 1.11.1.6 |
| 32195 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_8336.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1674;97_3137;98_6069;99_8336&stattab=map
- Last taxonomy: Paracoccus
- 16S sequence: AB185957
- Sequence Identity:
- Total samples: 2123
- soil counts: 44
- aquatic counts: 415
- animal counts: 1497
- plant counts: 167
Sequence information
16S sequences
- @ref: 32195
- description: Paracoccus marinus gene for 16S ribosomal RNA, partial sequence, strain: KKL-A5
- accession: AB185957
- length: 1415
- database: nuccore
- NCBI tax ID: 288426
GC content
- @ref: 32195
- GC-content: 69
External links
@ref: 32195
culture collection no.: NBRC 100637, CIP 108500
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/717187 |
| 20218 | http://www.straininfo.net/strains/717188 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18218935 | Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated from coastal seawater in Tokyo Bay. | Khan ST, Takaichi S, Harayama S | Int J Syst Evol Microbiol | 10.1099/ijs.0.65103-0 | 2008 | Bacterial Typing Techniques, Carotenoids/*biosynthesis, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Glucosides/*biosynthesis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 19329608 | Paracoccus aestuarii sp. nov., isolated from tidal flat sediment. | Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.65759-0 | 2009 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Genetics |
| Phylogeny | 26971128 | Paracoccus cavernae sp. nov., isolated from a show cave. | Dominguez-Monino I, Jurado V, Hermosin B, Saiz-Jimenez C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001018 | 2016 | *Air Microbiology, Bacterial Typing Techniques, Base Composition, Caves/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 28933319 | Paracoccus sordidisoli sp. nov., isolated from an agricultural field contaminated with hexachlorocyclohexane isomers. | Singh AK, Kohli P, Mahato NK, Lal R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002289 | 2017 | Agriculture, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hexachlorocyclohexane/analysis, India, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/*analysis, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 31913112 | Paracoccus aeridis sp. nov., an indole-producing bacterium isolated from the rhizosphere of an orchid, Aerides maculosa. | Rai A, N S, G S, A S, G D, Ch S, Ch V R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003962 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, India, Indoleacetic Acids/chemistry, Nucleic Acid Hybridization, Orchidaceae/*microbiology, Paracoccus/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 28437 | 10.1099/ijs.0.65103-0 | 18218935 | ||||
| 32195 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28776041 | 28437 | |
| 40007 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6130 | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |