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Strain identifier

BacDive ID: 134263

Type strain: Yes

Species: Paracoccus marinus

Strain Designation: KKL-A5

NCBI tax ID(s): 288426 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 32195

BacDive-ID: 134263

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Paracoccus marinus KKL-A5 is an aerobe, Gram-negative, rod-shaped bacterium of the family Rhodobacteraceae.

NCBI tax id

  • NCBI tax id: 288426
  • Matching level: species

doi: 10.13145/bacdive134263.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Paracoccus
  • species: Paracoccus marinus
  • full scientific name: Paracoccus marinus Khan et al. 2008

@ref: 32195

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus marinus

strain designation: KKL-A5

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32195negative1 µm0.65 µmrod-shapedno
69480negative99.114

pigmentation

  • @ref: 32195
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 40007
  • name: Marine agar (MA)
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
32195positivegrowth10-35
32195positiveoptimum30mesophilic
40007positivegrowth22psychrophilic

culture pH

@refabilitytypepHPH range
32195positivegrowth06-09alkaliphile
32195positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32195
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.362

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
32195NaClpositivegrowth<5 %
32195NaClpositiveoptimum2.5 %
69480non-halophilic98.26

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3219522653asparagine+carbon source
3219528757fructose+carbon source
3219528260galactose+carbon source
3219517234glucose+carbon source
3219524996lactate+carbon source
3219515361pyruvate+carbon source

enzymes

@refvalueactivityec
32195catalase+1.11.1.6
32195cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_8336.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1674;97_3137;98_6069;99_8336&stattab=map
  • Last taxonomy: Paracoccus
  • 16S sequence: AB185957
  • Sequence Identity:
  • Total samples: 2123
  • soil counts: 44
  • aquatic counts: 415
  • animal counts: 1497
  • plant counts: 167

Sequence information

16S sequences

  • @ref: 32195
  • description: Paracoccus marinus gene for 16S ribosomal RNA, partial sequence, strain: KKL-A5
  • accession: AB185957
  • length: 1415
  • database: nuccore
  • NCBI tax ID: 288426

GC content

  • @ref: 32195
  • GC-content: 69

External links

@ref: 32195

culture collection no.: NBRC 100637, CIP 108500

straininfo link

@refpassport
20218http://www.straininfo.net/strains/717187
20218http://www.straininfo.net/strains/717188

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18218935Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated from coastal seawater in Tokyo Bay.Khan ST, Takaichi S, Harayama SInt J Syst Evol Microbiol10.1099/ijs.0.65103-02008Bacterial Typing Techniques, Carotenoids/*biosynthesis, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Glucosides/*biosynthesis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny19329608Paracoccus aestuarii sp. nov., isolated from tidal flat sediment.Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Shin KS, Yoon JH, Oh HM, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.65759-02009Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/*isolation & purification/physiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny26971128Paracoccus cavernae sp. nov., isolated from a show cave.Dominguez-Monino I, Jurado V, Hermosin B, Saiz-Jimenez CInt J Syst Evol Microbiol10.1099/ijsem.0.0010182016*Air Microbiology, Bacterial Typing Techniques, Base Composition, Caves/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Ubiquinone/chemistryTranscriptome
Phylogeny28933319Paracoccus sordidisoli sp. nov., isolated from an agricultural field contaminated with hexachlorocyclohexane isomers.Singh AK, Kohli P, Mahato NK, Lal RInt J Syst Evol Microbiol10.1099/ijsem.0.0022892017Agriculture, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hexachlorocyclohexane/analysis, India, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/*analysis, Ubiquinone/chemistryTranscriptome
Phylogeny31913112Paracoccus aeridis sp. nov., an indole-producing bacterium isolated from the rhizosphere of an orchid, Aerides maculosa.Rai A, N S, G S, A S, G D, Ch S, Ch V RInt J Syst Evol Microbiol10.1099/ijsem.0.0039622020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, India, Indoleacetic Acids/chemistry, Nucleic Acid Hybridization, Orchidaceae/*microbiology, Paracoccus/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmedID_cross_reference
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
2843710.1099/ijs.0.65103-018218935
32195Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604128437
40007Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6130
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes