Caenispirillum bisanense (KCTC 12839, JCM 14346, K92T)

Name: Caenispirillum bisanense (KCTC 12839, JCM 14346, K92T)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134240

Type strain

Strain Designation K92T, K92

Culture col. no. KCTC 12839 JCM 14346 K92T K92

NCBI tax ID(s) 414052

Special Collections JCM KCTC Literature strains

History JCM <-- J.-H. Yoon K92. KCTC <- JH Yoon, KRIBB

Links

Caenispirillum bisanense K92T is an anaerobe, Gram-negative, motile bacterium that was isolated from sludge.

Gram-negative motile spiral-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309441

JCM 14346,KCTC 12839

@ref 20215

Last LPSN update 2026-05-29 08:38:17

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Rhodospirillaceae

Genus Caenispirillum

Species Caenispirillum bisanense

Full scientific name Caenispirillum bisanense Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32067	negative	0.7-7 µm	0.5-0.7 µm	spiral-shaped
67771	negative
125439	negative				96.05

Pigmentation

32067

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
32067	positive	growth	15-47
32067	positive	optimum	37
67770	positive	growth	37
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
32067	positive	optimum	07-08
32067	positive	growth	6.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32067	anaerobe
67771	aerobe
125439	obligate aerobe	99.78

Spore formation

@ref	Spore formation	Confidence
32067
125439		98.939

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32067	NaCl	positive	growth	0.5-5.0 %
32067	NaCl	positive	optimum	2.75 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32067	16947 ChEBI	citrate	+	carbon source
32067	24265 ChEBI	gluconate	+	carbon source
32067	17754 ChEBI	glycerol	+	carbon source
32067	25115 ChEBI	malate	+	carbon source
32067	17632 ChEBI	nitrate	+	reduction
32067	33942 ChEBI	ribose	+	carbon source

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	cardiolipin biosynthesis	100	7 of 7
66794	cyanate degradation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	hydrogen production	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	photosynthesis	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	vitamin B1 metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B12 metabolism	82.35	28 of 34
66794	glycolysis	82.35	14 of 17
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	starch degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	lysine metabolism	78.57	33 of 42
66794	allantoin degradation	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	purine metabolism	77.66	73 of 94
66794	alanine metabolism	75.86	22 of 29
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	glutathione metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	methionine metabolism	69.23	18 of 26
66794	histidine metabolism	68.97	20 of 29
66794	tryptophan metabolism	68.42	26 of 38
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	tyrosine metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	arginine metabolism	62.5	15 of 24
66794	ketogluconate metabolism	62.5	5 of 8
66794	oxidative phosphorylation	61.54	56 of 91
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of sugar alcohols	56.25	9 of 16
66794	nitrate assimilation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	urea cycle	53.85	7 of 13
66794	degradation of sugar acids	52	13 of 25
66794	selenocysteine biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	degradation of pentoses	46.43	13 of 28
66794	sulfate reduction	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	vitamin K metabolism	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	creatinine degradation	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	ginsenoside metabolism	37.5	6 of 16
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carotenoid biosynthesis	36.36	8 of 22
66794	phenol degradation	35	7 of 20
66794	polyamine pathway	34.78	8 of 23
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	cyclohexanol degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	methanogenesis from CO2	25	3 of 12
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
32067	sludge
67770	Wastewater treatment plant of a dye works
67771	From wastewater	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF100694 (>99% sequence identity) for Caenispirillum bisanense subclade from Microbeatlas

Aquatic Samples	709
Soil Samples	342
Animal Samples	245
Plant Samples	54
Total Samples	1350

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952307v1 assembly for Caenispirillum bisanense JCM 14346	scaffold	GCA_039523075	414052	46.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32067	Caenispirillum bisanense strain K92 16S ribosomal RNA gene, partial sequence	EF100694	1441		414052

GC content

@ref	GC-content (mol%)	Method
32067	70
67770	70	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3952307v1 assembly for Caenispirillum bisanense JCM 14346
NCBI: GCA_039523075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	96.05	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.78	no
125439	motility	BacteriaNetⓘ	yes	76.10	no
125439	spore_formation	BacteriaNetⓘ	no	98.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caenispirillum humi sp. nov., a bacterium isolated from the soil of Korean pine garden.	Huq MA	Arch Microbiol	10.1007/s00203-017-1449-z	2017
Phylogeny	Caenispirillum bisanense gen. nov., sp. nov., isolated from sludge of a dye works.	Yoon JH, Kang SJ, Park S, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64910-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28314	IJSEM 1217 2007 ( DOI 10.1099/ijs.0.64910-0 , PubMed 17551032 )
#32067	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28314
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caenispirillum bisanense (KCTC 12839, JCM 14346, K92T)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039523075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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