Galbibacter mesophilus (NBRC 101624, CIP 109219, Mok-17)

Name: Galbibacter mesophilus (NBRC 101624, CIP 109219, Mok-17)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134228

Type strain

Strain Designation Mok-17

Culture col. no. NBRC 101624 CIP 109219 Mok-17

NCBI tax ID(s) 379069

Special Collections CIP Literature strains

Links

Galbibacter mesophilus Mok-17 is an obligate aerobe, Gram-negative, rod-shaped prokaryote that was isolated from Environment, Sea sediment.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 308289

NBRC 101624,CIP 109219

@ref 20215

Last LPSN update 2025-12-16 10:02:00

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Galbibacter

Species Galbibacter mesophilus

Full scientific name Galbibacter mesophilus Khan et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31967	negative	2 µm	0.6 µm	rod-shaped
125438
125438	negative
120914	negative			rod-shaped

Pigmentation

31967

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
36275	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120914	CIP Medium 13

Culture temp

@ref	Growth	Type	Temperature (°C)
31967	positive	growth	10-42
31967	positive	optimum	27.5
36275	positive	growth	25

Physiology and metabolism

Oxygen tolerance

120914

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31967	NaCl	positive	growth	03-07 %
31967	NaCl	positive	optimum	4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31967	17057 ChEBI	cellobiose	+	carbon source
31967	23652 ChEBI	dextrin	+	carbon source
31967	4853 ChEBI	esculin	+	hydrolysis
31967	28757 ChEBI	fructose	+	carbon source
31967	28260 ChEBI	galactose	+	carbon source
31967	5291 ChEBI	gelatin	+	carbon source
31967	17716 ChEBI	lactose	+	carbon source
31967	17306 ChEBI	maltose	+	carbon source
31967	37684 ChEBI	mannose	+	carbon source
31967	28053 ChEBI	melibiose	+	carbon source
31967	37657 ChEBI	methyl D-glucoside	+	carbon source
31967	17632 ChEBI	nitrate	+	reduction
120914	17632 ChEBI	nitrate	+	reduction
120914	16301 ChEBI	nitrite	-	reduction
31967	26271 ChEBI	proline	+	carbon source
31967	16634 ChEBI	raffinose	+	carbon source
31967	17822 ChEBI	serine	+	carbon source
31967	17992 ChEBI	sucrose	+	carbon source
31967	26986 ChEBI	threonine	+	carbon source
31967	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120914	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120914	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31967	catalase	+	1.11.1.6
120914	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
31967	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
31967	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
120914	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120914	ornithine decarboxylase	-	4.1.1.17
120914	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
120914	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120914	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
120914	Environment, Sea sediment	Okinawa	Japan	JPN	Asia	2004

Taxonmaps

69479

Global distribution of 16S sequence AB255367 (>99% sequence identity) for Galbibacter mesophilus subclade from Microbeatlas

Aquatic Samples	280
Soil Samples	25
Animal Samples	32
Plant Samples	5
Total Samples	342

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120914	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2372141v1 assembly for Galbibacter mesophilus Mok-17	contig	GCA_023721415	379069.4	379069	78.08

Genome browser: GCA_023721415

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31967	Galbibacter mesophilus gene for 16S rRNA, partial sequence	AB255367	1442		379069
124043	Galbibacter mesophilus gene for 16S rRNA, partial sequence, strain: NBRC 101624.	AB681493	1445		379069

GC content

31967

GC-content (mol%)37

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Galbibacter mesophilus Mok-17
NCBI: GCA_023721415.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	95.94	no
125438	aerobic	aerobicⓘ	yes	89.09	yes
125438	spore-forming	spore-formingⓘ	no	89.94	no
125438	thermophilic	thermophileⓘ	no	98.11	yes
125438	flagellated	motile2+ⓘ	no	94.76	no

Literature

Title	Authors	Journal	DOI	Year
Succession of the microbial community during the process of mechanical and biological pretreatment coupled with a bio-filter for removal of VOCs derived from domestic waste: a field study.	Hou J, Yu C, Meng F, He X, Wang Y, Chen W, Li M.	RSC Adv	10.1039/d1ra05962a	2021
Galbibacter marinus sp. nov., isolated from deep-sea sediment.	Li C, Lai Q, Fu Y, Chen S, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.044305-0	2012
Galbibacter mesophilus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae.	Khan ST, Nakagawa Y, Harayama S	Int J Syst Evol Microbiol	10.1099/ijs.0.64729-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31967	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28222 (see below)
#36275	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120914	Collection of Institut Pasteur ; Curators of the CIP; CIP 109219
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Galbibacter mesophilus (NBRC 101624, CIP 109219, Mok-17)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023721415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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