Name: Paraglaciecola agarilytica NO2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134227

Type strain:

Species: Paraglaciecola agarilytica

Strain Designation: NO2

Culture col. no.: KCTC 12755, LMG 23762

Strain history: <- SK Rhee, Chungbuk Natl. Univ.

NCBI tax ID(s): 395568 (species)

SI-ID 292113

LMG 23762, KCTC 12755

Section

Paraglaciecola agarilytica NO2 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
ovoid-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Paraglaciecola*
	Species	**Paraglaciecola agarilytica**
	Full Scientific Name (LPSN)	Paraglaciecola agarilytica (Yong et al. 2007) Shivaji and Reddy 2014

Synonym

Glaciecola agarilytica

Information on morphological and physiological properties Morphology

[Ref.: #31963]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31963]	Cell width	1.25 µm

[Ref.: #31963]	Cell shape	ovoid-shaped

[Ref.: #31963]	Motility	yes

[Ref.: #31963]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31963]	growth	07-30 °C
[Ref.: #31963]	optimum	33.5 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #31963]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31963]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31963]		NaCl		growth	02-08	%
[Ref.: #31963]		NaCl		optimum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31963]	acetate ChEBI	+	carbon source
[Ref.: #31963]	cellobiose ChEBI	+	carbon source
[Ref.: #31963]	dextrin ChEBI	+	carbon source
[Ref.: #31963]	esculin ChEBI	+	hydrolysis
[Ref.: #31963]	fructose ChEBI	+	carbon source
[Ref.: #31963]	galactose ChEBI	+	carbon source
[Ref.: #31963]	malate ChEBI	+	carbon source
[Ref.: #31963]	mannose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31963]		catalase	+	1.11.1.6
[Ref.: #31963]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31963]	Sample type/isolated from	marine sediment

[Ref.: #67771]	Sample type/isolated from	From sediment
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ784575 (>99% sequence identity) for Paraglaciecola from Microbeatlas

Aquatic Samples	9023
Soil Samples	234
Animal Samples	6581
Plant Samples	54
Total Samples	15892

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31963]	Glaciecola agarilytica strain NO2 16S ribosomal RNA gene, partial sequence	DQ784575	1463	GenBank	395568 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraglaciecola agarilytica NO2	GCA_000314935	contig	GenBank	1125747 tax ID	*
[Ref.: #66792]	Paraglaciecola agarilytica NO2	2529292809	draft	JGI IMG/M	1125747 tax ID	*

[Ref.: #31963]

GC-content

45 mol%

Availability in culture collections External links

[Ref.: #31963]

Culture collection no.

KCTC 12755, LMG 23762

[Ref.: #91821]

SI-ID 292113

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic analyses of the genus Glaciecola: emended description of the genus Glaciecola, transfer of Glaciecola mesophila, G. agarilytica, G. aquimarina, G. arctica, G. chathamensis, G. polaris and G. psychrophila to the genus Paraglaciecola gen. nov. as Paraglaciecola mesophila comb. nov., P. agarilytica comb. nov., P. aquimarina comb. nov., P. arctica comb. nov., P. chathamensis comb. nov., P. polaris comb. nov. and P. psychrophila comb. nov., and description of Paraglaciecola oceanifecundans sp. nov., isolated from the Southern Ocean.	Shivaji S, Reddy GS	Int J Syst Evol Microbiol	10.1099/ijs.0.065409-0	2014	*
Phylogeny	Glaciecola agarilytica sp. nov., an agar-digesting marine bacterium from the East Sea, Korea.	Yong JJ, Park SJ, Kim HJ, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.64723-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31963

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28218 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91821

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID292113.1 )

#28218

IJSEM 951 2007 ( DOI 10.1099/ijs.0.64723-0 , PubMed 17473239 )

* These data were automatically processed and therefore are not curated

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