Methylobacterium jeotgali (KCTC 12671, LMG 23639, S2R03-9)

Name: Methylobacterium jeotgali (KCTC 12671, LMG 23639, S2R03-9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134213

Type strain

Strain Designation S2R03-9

Culture col. no. KCTC 12671 LMG 23639 S2R03-9

NCBI tax ID(s) 381630

Special Collections KCTC Literature strains

Links

Methylobacterium jeotgali S2R03-9 is an aerobe, Gram-negative, motile prokaryote that was isolated from food product.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297261

KCTC 12671,LMG 23639

@ref 20215

Last LPSN update 2025-12-16 10:02:00

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Methylobacteriaceae

Genus Methylobacterium

Species Methylobacterium jeotgali

Full scientific name Methylobacterium jeotgali Aslam et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31903	negative	1.3 µm	0.85 µm	rod-shaped
67771	negative
125438	negative				97.794

Pigmentation

31903

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
31903	positive	growth	20-30
31903	positive	optimum	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31903	positive	optimum	7
31903	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31903	aerobe
67771	aerobe
125439	obligate aerobe	93.2

Spore formation

@ref	Spore formation	Confidence
31903
125439		91.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31903	NaCl	positive	growth	0-1 %

Observation

31903

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31903	16193 ChEBI	3-hydroxybenzoate	+	carbon source
31903	37054 ChEBI	3-hydroxybutyrate	+	carbon source
31903	17879 ChEBI	4-hydroxybenzoate	+	carbon source
31903	30089 ChEBI	acetate	+	carbon source
31903	22599 ChEBI	arabinose	+	carbon source
31903	4853 ChEBI	esculin	+	hydrolysis
31903	16236 ChEBI	ethanol	+	carbon source
31903	17754 ChEBI	glycerol	+	carbon source
31903	24996 ChEBI	lactate	+	carbon source
31903	15792 ChEBI	malonate	+	carbon source
31903	26271 ChEBI	proline	+	carbon source
31903	26546 ChEBI	rhamnose	+	carbon source
31903	17822 ChEBI	serine	+	carbon source
31903	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31903	16183 ChEBI	methane

Enzymes

@ref	Value	Activity	Ec
31903	catalase	+	1.11.1.6
31903	cytochrome oxidase	+	1.9.3.1
31903	gelatinase	+
31903	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
31903	food product
67771	From fermented food (Shrimp Jeotgal)	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ471331 (>99% sequence identity) for Methylobacterium jeotgali subclade from Microbeatlas

Aquatic Samples	3364
Soil Samples	1597
Animal Samples	14037
Plant Samples	787
Total Samples	19785

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2217934v1 assembly for Methylobacterium jeotgali LMG 23639	contig	GCA_022179345	381630.3	8069203379	381630	54.61

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31903	Methylobacterium jeotgali strain S2R03-9 16S ribosomal RNA gene, partial sequence	DQ471331	1380		381630

GC content

31903

GC-content (mol%)64.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methylobacterium jeotgali LMG 23639
NCBI: GCA_022179345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.20	no
125439	motility	BacteriaNetⓘ	yes	61.00	no
125439	gram_stain	BacteriaNetⓘ	positive	68.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methylobacterium jeotgali LMG 23639
NCBI: GCA_022179345.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.79	no
125438	anaerobic	anaerobicⓘ	no	93.01	yes
125438	aerobic	aerobicⓘ	yes	83.41	yes
125438	spore-forming	spore-formingⓘ	no	87.19	yes
125438	thermophilic	thermophileⓘ	no	91.71	no
125438	flagellated	motile2+ⓘ	yes	67.95	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Impact of glyphosate and glyphosate-based herbicides on phyllospheric Methylobacterium.	Palberg D, Kaszecki E, Dhanjal C, Kisiala A, Morrison EN, Stock N, Emery RJN.	BMC Plant Biol	10.1186/s12870-024-04818-x	2024
Phylogeny	Methylobacterium segetis sp. nov., a novel member of the family Methylobacteriaceae isolated from soil on Jeju Island.	Ten LN, Li W, Elderiny NS, Kim MK, Lee SY, Rooney AP, Jung HY	Arch Microbiol	10.1007/s00203-019-01784-z	2019
Phylogeny	Methylobacterium oxalidis sp. nov., isolated from leaves of Oxalis corniculata.	Tani A, Sahin N, Kimbara K	Int J Syst Evol Microbiol	10.1099/ijs.0.033019-0	2011
Phylogeny	Methylobacterium cerastii sp. nov., isolated from the leaf surface of Cerastium holosteoides.	Wellner S, Lodders N, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.030767-0	2011
Phylogeny	Methylobacterium marchantiae sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort.	Schauer S, Kampfer P, Wellner S, Sproer C, Kutschera U	Int J Syst Evol Microbiol	10.1099/ijs.0.021915-0	2010
Phylogeny	Methylobacterium jeotgali sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood.	Aslam Z, Lee CS, Kim KH, Im WT, Ten LN, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64625-0	2007

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#31903	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28161 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methylobacterium jeotgali (KCTC 12671, LMG 23639, S2R03-9)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_022179345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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