Name: Methylobacterium jeotgali S2R03-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134213

Type strain:

Species: Methylobacterium jeotgali

Strain Designation: S2R03-9

Culture col. no.: KCTC 12671, LMG 23639

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 381630 (species)

SI-ID 297261

KCTC 12671, LMG 23639

Section

Methylobacterium jeotgali S2R03-9 is an aerobe, Gram-negative, motile bacterium that was isolated from food product.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium jeotgali**
	Full Scientific Name (LPSN)	Methylobacterium jeotgali Aslam et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31903]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31903]	Cell length	1.3 µm

[Ref.: #31903]	Cell width	0.85 µm

[Ref.: #31903]	Cell shape	rod-shaped

[Ref.: #31903]	Motility	yes

[Ref.: #31903]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31903]	growth	20-30 °C
[Ref.: #31903]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #31903]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31903]			optimum	7
[Ref.: #31903]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31903]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31903]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31903]		NaCl		growth	0-1	%

[Ref.: #31903]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31903]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #31903]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31903]	4-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #31903]	acetate ChEBI	+	carbon source
[Ref.: #31903]	arabinose ChEBI	+	carbon source
[Ref.: #31903]	esculin ChEBI	+	hydrolysis
[Ref.: #31903]	ethanol ChEBI	+	carbon source
[Ref.: #31903]	glycerol ChEBI	+	carbon source
[Ref.: #31903]	lactate ChEBI	+	carbon source
[Ref.: #31903]	malonate ChEBI	+	carbon source
[Ref.: #31903]	proline ChEBI	+	carbon source
[Ref.: #31903]	rhamnose ChEBI	+	carbon source
[Ref.: #31903]	serine ChEBI	+	carbon source
[Ref.: #31903]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31903]		methane ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31903]	catalase	+	1.11.1.6
[Ref.: #31903]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31903]	gelatinase	+
[Ref.: #31903]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31903]	Sample type/isolated from	food product

[Ref.: #67771]	Sample type/isolated from	From fermented food (Shrimp Jeotgal)
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ471331 (>99% sequence identity) for Methylobacterium jeotgali subclade from Microbeatlas

Aquatic Samples	3364
Soil Samples	1597
Animal Samples	14037
Plant Samples	787
Total Samples	19785

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31903]	Methylobacterium jeotgali strain S2R03-9 16S ribosomal RNA gene, partial sequence	DQ471331	1380	GenBank	381630 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylobacterium jeotgali LMG 23639	GCA_022179345	contig	GenBank	381630 tax ID	*

[Ref.: #31903]

GC-content

64.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylobacterium jeotgali LMG 23639 NCBI: GCA_022179345.1
[Ref.: #69480]	flagellated	no	69.532	no
[Ref.: #69480]	gram-positive	no	98.185	yes
[Ref.: #69480]	anaerobic	no	98.373	yes
[Ref.: #69480]	aerobic	yes	88.77	yes
[Ref.: #69480]	halophile	no	95.17	no
[Ref.: #69480]	spore-forming	no	92.944	yes
[Ref.: #69480]	motile	yes	88.789	yes
[Ref.: #69480]	glucose-ferment	no	91.352	no
[Ref.: #69480]	thermophile	no	97.239	yes
[Ref.: #69480]	glucose-util	yes	84.331	no

Availability in culture collections External links

[Ref.: #31903]

Culture collection no.

KCTC 12671, LMG 23639

[Ref.: #91808]

SI-ID 297261

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium segetis sp. nov., a novel member of the family Methylobacteriaceae isolated from soil on Jeju Island.	Ten LN, Li W, Elderiny NS, Kim MK, Lee SY, Rooney AP, Jung HY	Arch Microbiol	10.1007/s00203-019-01784-z	2019	*
Phylogeny	Methylobacterium oxalidis sp. nov., isolated from leaves of Oxalis corniculata.	Tani A, Sahin N, Kimbara K	Int J Syst Evol Microbiol	10.1099/ijs.0.033019-0	2011	*
Phylogeny	Methylobacterium cerastii sp. nov., isolated from the leaf surface of Cerastium holosteoides.	Wellner S, Lodders N, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.030767-0	2011	*
Phylogeny	Methylobacterium marchantiae sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort.	Schauer S, Kampfer P, Wellner S, Sproer C, Kutschera U	Int J Syst Evol Microbiol	10.1099/ijs.0.021915-0	2010	*
Phylogeny	Methylobacterium jeotgali sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood.	Aslam Z, Lee CS, Kim KH, Im WT, Ten LN, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64625-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31903

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28161 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91808

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297261.1 )

#28161

IJSEM 566 2007 ( DOI 10.1099/ijs.0.64625-0 , PubMed 17329786 )

* These data were automatically processed and therefore are not curated

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Methylobacterium jeotgali LMG 23639

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