Name: Shewanella psychrophila WP2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134206

Type strain:

Species: Shewanella psychrophila

Strain Designation: WP2

Culture col. no.: JCM 13876, CGMCC 1.6159

NCBI tax ID(s): 225848 (species)

SI-ID 297325

CGMCC 1.6159, JCM 13876, CIP 109514

Section

Shewanella psychrophila WP2 is a facultative anaerobe, psychrophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
facultative anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella psychrophila**
	Full Scientific Name (LPSN)	Shewanella psychrophila Xiao et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31844]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #31844]	Cell length	3.5 µm

[Ref.: #31844]	Cell width	0.65 µm

[Ref.: #31844]	Cell shape	rod-shaped

[Ref.: #31844]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.281

[Ref.: #31844]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31844]			growth	0-20 °C
[Ref.: #31844]			optimum	10-15 °C

[Ref.: #31844]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #31844]			optimum	7
[Ref.: #31844]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31844]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.978

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31844]		NaCl		growth	1-7.2	%
[Ref.: #31844]		NaCl		optimum	03-04	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31844]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #31844]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #31844]	alanine ChEBI	+	carbon source
[Ref.: #31844]	DL-carnitine ChEBI	+	carbon source
[Ref.: #31844]	glutamate ChEBI	+	carbon source
[Ref.: #31844]	histidine ChEBI	+	carbon source
[Ref.: #31844]	L-alaninamide ChEBI	+	carbon source
[Ref.: #31844]	leucine ChEBI	+	carbon source
[Ref.: #31844]	maltose ChEBI	+	carbon source
[Ref.: #31844]	myo-inositol ChEBI	+	carbon source
[Ref.: #31844]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31844]	serine ChEBI	+	carbon source
[Ref.: #31844]	sucrose ChEBI	+	carbon source
[Ref.: #31844]	threonine ChEBI	+	carbon source
[Ref.: #31844]	thymidine ChEBI	+	carbon source
[Ref.: #31844]	trehalose ChEBI	+	carbon source
[Ref.: #31844]	tween 40 ChEBI	+	carbon source
[Ref.: #31844]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31844]		catalase	+	1.11.1.6
[Ref.: #31844]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31844]	Sample type/isolated from	marine sediment
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31844]	Shewanella psychrophila partial 16S rRNA gene, type strain WP2T	AJ551089	1486	GenBank	225848 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella psychrophila WP2	GCA_002005305	complete	GenBank	225848 tax ID	*
[Ref.: #66792]	Shewanella psychrophila strain WP2	225848.8	complete	PATRIC	225848 tax ID	*
[Ref.: #66792]	Shewanella psychrophila WP2	2579779173	draft	JGI IMG/M	225848 tax ID	*

[Ref.: #31844]

GC-content

51 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella psychrophila WP2 NCBI: GCA_002005305.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella psychrophila WP2 NCBI: GCA_002005305.1
[Ref.: #69480]	flagellated	yes	84.786	no
[Ref.: #69480]	gram-positive	no	98.744	yes
[Ref.: #69480]	anaerobic	no	97.939	yes
[Ref.: #69480]	aerobic	no	63.336	yes
[Ref.: #69480]	halophile	yes	53.096	no
[Ref.: #69480]	spore-forming	no	95.613	no
[Ref.: #69480]	glucose-util	yes	91.235	no
[Ref.: #69480]	thermophile	no	99.646	no
[Ref.: #69480]	motile	yes	93.694	yes
[Ref.: #69480]	glucose-ferment	no	50.578	no

Availability in culture collections External links

[Ref.: #31844]

Culture collection no.

JCM 13876, CGMCC 1.6159

[Ref.: #91802]

SI-ID 297325

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment.	Xiao X, Wang P, Zeng X, Bartlett DH, Wang F	Int J Syst Evol Microbiol	10.1099/ijs.0.64500-0	2007	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31844

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28109 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91802

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297325.1 )

#28109

IJSEM 60 2007 ( DOI 10.1099/ijs.0.64500-0 , PubMed 17220442 )

* These data were automatically processed and therefore are not curated

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