Name: Azonexus caeni Slu-05
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134168

Type strain:

Species: Azonexus caeni

Strain Designation: Slu-05

Culture col. no.: CCUG 56488, DSM 17719, KCTC 12530, CCBAU 10199

Strain history: <- ZX Quan, KRIBB

NCBI tax ID(s): 266126 (species)

SI-ID 232878

KCTC 12530, DSM 17719

Section

Azonexus caeni Slu-05 is an aerobe, Gram-negative, motile bacterium that was isolated from sludge of aerobic digester treating municipal solid waste and sewage.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Azonexaceae*
	Genus	*Azonexus*
	Species	**Azonexus caeni**
	Full Scientific Name (LPSN)	Azonexus caeni Quan et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31671]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31671]	Cell length	1.6-2.3 µm

[Ref.: #31671]	Cell width	0.7-1.1 µm

[Ref.: #31671]	Cell shape	rod-shaped

[Ref.: #31671]	Motility	yes

[Ref.: #31671]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31671]	growth	20-40 °C
[Ref.: #31671]	optimum	25-30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #31671]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31671]			optimum	7
[Ref.: #31671]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31671]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31671]

Ability of spore formation

[Ref.: #31671]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31671]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31671]	acetate ChEBI	+	carbon source
[Ref.: #31671]	lactate ChEBI	+	carbon source
[Ref.: #31671]	malate ChEBI	+	carbon source
[Ref.: #31671]	malonate ChEBI	+	carbon source
[Ref.: #31671]	nitrate ChEBI	+	reduction
[Ref.: #31671]	proline ChEBI	+	carbon source
[Ref.: #31671]	propionate ChEBI	+	carbon source
[Ref.: #31671]	valerate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31671]	catalase	+	1.11.1.6
[Ref.: #31671]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31671]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31671]	Sample type/isolated from	sludge of aerobic digester treating municipal solid waste and sewage

[Ref.: #67771]	Sample type/isolated from	From sea water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Goseong, East Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	#Solid waste
#Engineered	#Waste	#Wastewater
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB166882 (>99% sequence identity) for Azonexus caeni subclade from Microbeatlas

Aquatic Samples	3375
Soil Samples	1176
Animal Samples	401
Plant Samples	343
Total Samples	5295

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31671]	Azonexus caeni gene for 16S rRNA, partial sequence	AB166882	1467	GenBank	266126 tax ID
[Ref.: #67771]	Clematis lasiandra chloroplast rpoB gene for RNA polymerase beta subunit, partial cds and rpoB-trnC intergenic spacer, partial sequence	AB116882	1146	ENA	231651 tax ID

[Ref.: #31671]

GC-content

65.6 mol%

Availability in culture collections External links

[Ref.: #31671]

Culture collection no.

CCUG 56488, DSM 17719, KCTC 12530, CCBAU 10199

[Ref.: #91766]

SI-ID 232878

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Azonexus hydrophilus sp. nov., a nifH gene-harbouring bacterium isolated from freshwater.	Chou JH, Jiang SR, Cho JC, Song J, Lin MC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65434-0	2008	*
Phylogeny	Azonexus caeni sp. nov., a denitrifying bacterium isolated from sludge of a wastewater treatment plant.	Quan ZX, Im WT, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64019-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31671

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27950 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91766

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232878.1 )

#27950

IJSEM 1043 2006 ( DOI 10.1099/ijs.0.64019-0 , PubMed 16627652 )

* These data were automatically processed and therefore are not curated

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