Name: Alcaligenes aquatilis CCUG 50924
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134159

Type strain:

Species: Alcaligenes aquatilis

Culture col. no.: CCUG 50924, CIP 108999, LMG 22996

Strain history: CIP <- 2005, CCUG <- 2005, LMG

NCBI tax ID(s): 323284 (species)

SI-ID 127553

LMG 22996, CCUG 50924, CIP 108999

Section

Alcaligenes aquatilis CCUG 50924 is an anaerobe, Gram-negative, motile bacterium that was isolated from Sediment,estuary.

Gram-negative
motile
rod-shaped
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Alcaligenes*
	Species	**Alcaligenes aquatilis**
	Full Scientific Name (LPSN)	Alcaligenes aquatilis Van Trappen et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31582]	Gram stain	negative
[Ref.: #116439]	Gram stain	negative

[Ref.: #31582]	Cell length	1.75 µm

[Ref.: #31582]	Cell width	0.9 µm

[Ref.: #31582]	Cell shape	rod-shaped
[Ref.: #116439]	Cell shape	rod-shaped

[Ref.: #31582]	Motility	yes
[Ref.: #116439]	Motility	yes

[Ref.: #31582]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36307]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #36307]

Culture medium growth

[Ref.: #36307]

Culture medium composition

expand / minimize

[Ref.: #116439]

Culture medium

CIP Medium 328

[Ref.: #116439]

Culture medium growth

[Ref.: #116439]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31582]	growth	04-35 °C
[Ref.: #31582]	optimum	21 °C
[Ref.: #36307]	growth	30 °C
[Ref.: #59049]	growth	28-37 °C

[Ref.: #31582]	Temperature range	psychrophilic
[Ref.: #36307]	Temperature range	mesophilic
[Ref.: #59049]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31582]	Oxygen tolerance	anaerobe
[Ref.: #59049]	Oxygen tolerance	aerobe
[Ref.: #116439]	Oxygen tolerance	obligate aerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116439]		nitrate ChEBI	-	reduction
[Ref.: #116439]		nitrite ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116439]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116439]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31582]	catalase	+	1.11.1.6
[Ref.: #116439]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #31582]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116439]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116439]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116439]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116439]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116439]	11602	-	+	+	+	-	+	-	+	+	+	+	+	+	+	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #59049]	Sample type/isolated from	Sediment,estuary
[Ref.: #59049]	Sampling date	1983
[Ref.: #59049]	Geographic location (country and/or sea, region)	Weser
[Ref.: #59049]	Country	Germany
[Ref.: #59049]	Country ISO 3 Code	DEU
[Ref.: #59049]	Continent	Europe

[Ref.: #116439]	Sample type/isolated from	Environment, Sediments
[Ref.: #116439]	Geographic location (country and/or sea, region)	Weser estuary
[Ref.: #116439]	Country	Germany
[Ref.: #116439]	Country ISO 3 Code	DEU
[Ref.: #116439]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ937889 (>99% sequence identity) for Alcaligenes from Microbeatlas

Aquatic Samples	1182
Soil Samples	516
Animal Samples	2918
Plant Samples	286
Total Samples	4902

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #116439]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31582]	Alcaligenes aquatilis 16S rRNA gene, type strain LMG 22996T	AJ937889	1082	GenBank	323284 tax ID

[Ref.: #31582]

GC-content

56 mol%

Availability in culture collections External links

[Ref.: #31582]

Culture collection no.

CCUG 50924, CIP 108999, LMG 22996

[Ref.: #91757]

SI-ID 127553

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alcaligenes aquatilis sp. nov., a novel bacterium from sediments of the Weser Estuary, Germany, and a salt marsh on Shem Creek in Charleston Harbor, USA.	Van Trappen S, Tan TL, Samyn E, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.63849-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31582

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27871 (see below)

#36307 ; Curators of the CIP;
#59049 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50924

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91757

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127553.1 )

#116439 Collection of Institut Pasteur ; Curators of the CIP; CIP 108999

#27871

IJSEM 2571 2005 ( DOI 10.1099/ijs.0.63849-0 , PubMed 16280529 )

* These data were automatically processed and therefore are not curated

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