Shewanella pneumatophori (JCM 13187, NCIMB 14060, SCRC-2738)

Name: Shewanella pneumatophori (JCM 13187, NCIMB 14060, SCRC-2738)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134152

Type strain

Strain Designation SCRC-2738

Culture col. no. JCM 13187 NCIMB 14060 SCRC-2738 KCTC 23973 CIP 109027 1 more

NCBI tax ID(s) 314092

Special Collections JCM KCTC CIP Literature strains

History JCM <-- I. Yumoto SCRC-2738.

Links

Shewanella pneumatophori SCRC-2738 is an anaerobe, Gram-negative, motile bacterium that was isolated from Intestines of Pacific mackerel.

Gram-negative motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 237176

KCTC 23973,NCIMB 14060,JCM 13187,CIP 109027

@ref 20215

Last LPSN update 2026-05-29 08:38:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella pneumatophori

Full scientific name Shewanella pneumatophori Hirota et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
31557	negative	3 µm	0.5 µm	rod-shaped
125439	negative					98.204

Pigmentation

31557

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31557	positive	growth	04-32
31557	positive	optimum	27
67770	positive	growth	27

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31557	anaerobe
125439	obligate aerobe	95.991

Spore formation

@ref	Spore formation	Confidence
125439		99.954

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31557	NaCl	positive	growth	01-08 %
31557	NaCl	positive	optimum	4.5 %

Observation

67770

Observationquinones: Q-7, Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31557	28757 ChEBI	fructose	+	carbon source
31557	28260 ChEBI	galactose	+	carbon source
31557	17234 ChEBI	glucose	+	carbon source
31557	53424 ChEBI	tween 20	+	carbon source
31557	53423 ChEBI	tween 40	+	carbon source
31557	53425 ChEBI	tween 60	+	carbon source
31557	53426 ChEBI	tween 80	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31557	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
31557	catalase	+	1.11.1.6
31557	cytochrome oxidase	+	1.9.3.1
31557	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes
#Host Body-Site	#Gastrointestinal tract

Isolation

@ref	Sample type	Host species
31557	Intestines of Pacific mackerel
67770	Intestines of Pacific mackerel (Pneumatophorus japonicus)	Pneumatophorus japonicus

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Shewanella pneumatophori SCRC-2738	complete			651717154	314092	99.48
66792	ASM2328389v1 assembly for Shewanella pneumatophori KCTC 23973	contig	GCA_023283895	314092.4	8046328029	314092	70.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31557	Shewanella pneumatophori gene for 16S rRNA, partial sequence	AB204519	1515		314092

GC content

@ref	GC-content (mol%)	Method
31557	42.8
67770	42.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2328389v1 assembly for Shewanella pneumatophori KCTC 23973
NCBI: GCA_023283895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.99	no
125439	gram_stain	BacteriaNetⓘ	negative	98.20	no
125439	motility	BacteriaNetⓘ	yes	64.76	no
125439	spore_formation	BacteriaNetⓘ	no	99.95	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The Escherichia coli highly expressed entD gene complements the pfaE deficiency in a pfa gene clone responsible for the biosynthesis of long-chain n-3 polyunsaturated fatty acids.	Sugihara S, Orikasa Y, Okuyama H	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.01987.x	2010
Metabolism	pfaB products determine the molecular species produced in bacterial polyunsaturated fatty acid biosynthesis.	Orikasa Y, Tanaka M, Sugihara S, Hori R, Nishida T, Ueno A, Morita N, Yano Y, Yamamoto K, Shibahara A, Hayashi H, Yamada Y, Yamada A, Yu R, Watanabe K, Okuyama H	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01582.x	2009
Enzymology	A phosphopantetheinyl transferase gene essential for biosynthesis of n-3 polyunsaturated fatty acids from Moritella marina strain MP-1.	Orikasa Y, Nishida T, Hase A, Watanabe K, Morita N, Okuyama H	FEBS Lett	10.1016/j.febslet.2006.07.008	2006
Phylogeny	Shewanella pneumatophori sp. nov., an eicosapentaenoic acid-producing marine bacterium isolated from the intestines of Pacific mackerel (Pneumatophorus japonicus).	Hirota K, Nodasaka Y, Orikasa Y, Okuyama H, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.63804-0	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27847	IJSEM 2355 2005 ( DOI 10.1099/ijs.0.63804-0 , PubMed 16280496 )
#31557	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27847
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella pneumatophori (JCM 13187, NCIMB 14060, SCRC-2738)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_023283895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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