Name: Shewanella pneumatophori SCRC-2738
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134152

Type strain:

Species: Shewanella pneumatophori

Strain Designation: SCRC-2738

Culture col. no.: JCM 13187, NCIMB 14060, CGMCC 1.8482, CIP 109027, KCTC 23973

Strain history: I. Yumoto SCRC-2738.

NCBI tax ID(s): 314092 (species)

SI-ID 237176

NCIMB 14060, JCM 13187, CIP 109027

Section

Shewanella pneumatophori SCRC-2738 is an anaerobe, Gram-negative, motile bacterium that was isolated from Intestines of Pacific mackerel.

Gram-negative
motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella pneumatophori**
	Full Scientific Name (LPSN)	Shewanella pneumatophori Hirota et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31557]	Gram stain	negative

[Ref.: #31557]	Cell length	3 µm

[Ref.: #31557]	Cell width	0.5 µm

[Ref.: #31557]	Cell shape	rod-shaped

[Ref.: #31557]	Motility	yes

[Ref.: #31557]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31557]	growth	04-32 °C
[Ref.: #31557]	optimum	27 °C
[Ref.: #67770]	growth	27 °C

[Ref.: #31557]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31557]

Oxygen tolerance

anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31557]		NaCl		growth	01-08	%
[Ref.: #31557]		NaCl		optimum	4.5	%

[Ref.: #67770]

Observation

quinones: Q-7, Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31557]	fructose ChEBI	+	carbon source
[Ref.: #31557]	galactose ChEBI	+	carbon source
[Ref.: #31557]	glucose ChEBI	+	carbon source
[Ref.: #31557]	tween 20 ChEBI	+	carbon source
[Ref.: #31557]	tween 40 ChEBI	+	carbon source
[Ref.: #31557]	tween 60 ChEBI	+	carbon source
[Ref.: #31557]	tween 80 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31557]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31557]	catalase	+	1.11.1.6
[Ref.: #31557]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31557]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31557]	Sample type/isolated from	Intestines of Pacific mackerel

[Ref.: #67770]	Sample type/isolated from	Intestines of Pacific mackerel (Pneumatophorus japonicus)
[Ref.: #67770]	Host species	Pneumatophorus japonicus
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31557]	Shewanella pneumatophori gene for 16S rRNA, partial sequence	AB204519	1515	GenBank	314092 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella pneumatophori SCRC-2738	651717154	draft	JGI IMG/M	314092 tax ID	*
[Ref.: #66792]	Shewanella pneumatophori KCTC 23973	GCA_023283895	contig	GenBank	314092 tax ID	*

[Ref.: #31557]	GC-content	42.8 mol%
[Ref.: #67770]	GC-content	42.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31557]

Culture collection no.

JCM 13187, NCIMB 14060, CGMCC 1.8482, CIP 109027, KCTC 23973

[Ref.: #91750]

SI-ID 237176

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The Escherichia coli highly expressed entD gene complements the pfaE deficiency in a pfa gene clone responsible for the biosynthesis of long-chain n-3 polyunsaturated fatty acids.	Sugihara S, Orikasa Y, Okuyama H	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.01987.x	2010	*
Metabolism	pfaB products determine the molecular species produced in bacterial polyunsaturated fatty acid biosynthesis.	Orikasa Y, Tanaka M, Sugihara S, Hori R, Nishida T, Ueno A, Morita N, Yano Y, Yamamoto K, Shibahara A, Hayashi H, Yamada Y, Yamada A, Yu R, Watanabe K, Okuyama H	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01582.x	2009	*
Enzymology	A phosphopantetheinyl transferase gene essential for biosynthesis of n-3 polyunsaturated fatty acids from Moritella marina strain MP-1.	Orikasa Y, Nishida T, Hase A, Watanabe K, Morita N, Okuyama H	FEBS Lett	10.1016/j.febslet.2006.07.008	2006	*
Phylogeny	Shewanella pneumatophori sp. nov., an eicosapentaenoic acid-producing marine bacterium isolated from the intestines of Pacific mackerel (Pneumatophorus japonicus).	Hirota K, Nodasaka Y, Orikasa Y, Okuyama H, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.63804-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31557

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27847 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#91750

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID237176.1 )

#27847

IJSEM 2355 2005 ( DOI 10.1099/ijs.0.63804-0 , PubMed 16280496 )

* These data were automatically processed and therefore are not curated

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