Photobacterium aplysiae (KCTC 12383, JCM 12948, GMD509)

Name: Photobacterium aplysiae (KCTC 12383, JCM 12948, GMD509)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134148

Type strain

Strain Designation GMD509

Culture col. no. KCTC 12383 JCM 12948 GMD509

NCBI tax ID(s) 299462

Special Collections JCM KCTC Literature strains

Links

Photobacterium aplysiae GMD509 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative motile rod-shaped facultative anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 232859

CAIM 14,KCTC 12383,JCM 12948,DSM 18147

@ref 20215

Last LPSN update 2026-02-09 11:32:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Photobacterium

Species Photobacterium aplysiae

Full scientific name Photobacterium aplysiae Seo et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31538	negative	2.5 µm	0.65 µm	rod-shaped

Pigmentation

31538

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
31538	positive	growth	10-31
31538	positive	optimum	25

Culture pH

@ref	Ability	Type	PH	PH range
31538	positive	optimum	8
31538	positive	growth	04-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

31538

Oxygen tolerancefacultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31538	NaCl	positive	growth	01-05 %
31538	NaCl	positive	optimum	3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31538	16449 ChEBI	alanine	+	carbon source
31538	22653 ChEBI	asparagine	+	carbon source
31538	35391 ChEBI	aspartate	+	carbon source
31538	17057 ChEBI	cellobiose	+	carbon source
31538	23652 ChEBI	dextrin	+	carbon source
31538	28757 ChEBI	fructose	+	carbon source
31538	28260 ChEBI	galactose	+	carbon source
31538	24265 ChEBI	gluconate	+	carbon source
31538	17234 ChEBI	glucose	+	carbon source
31538	29987 ChEBI	glutamate	+	carbon source
31538	17754 ChEBI	glycerol	+	carbon source
31538	15428 ChEBI	glycine	+	carbon source
31538	28087 ChEBI	glycogen	+	carbon source
31538	17596 ChEBI	inosine	+	carbon source
31538	24996 ChEBI	lactate	+	carbon source
31538	17306 ChEBI	maltose	+	carbon source
31538	29864 ChEBI	mannitol	+	carbon source
31538	37684 ChEBI	mannose	+	carbon source
31538	51850 ChEBI	methyl pyruvate	+	carbon source
31538	506227 ChEBI	N-acetylglucosamine	+	carbon source
31538	17632 ChEBI	nitrate	+	reduction
31538	17822 ChEBI	serine	+	carbon source
31538	30031 ChEBI	succinate	+	carbon source
31538	17992 ChEBI	sucrose	+	carbon source
31538	26986 ChEBI	threonine	+	carbon source
31538	27082 ChEBI	trehalose	+	carbon source
31538	53423 ChEBI	tween 40	+	carbon source
31538	53426 ChEBI	tween 80	+	carbon source
31538	16704 ChEBI	uridine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31538	acid phosphatase	+	3.1.3.2
31538	alkaline phosphatase	+	3.1.3.1
31538	catalase	+	1.11.1.6
31538	cytochrome oxidase	+	1.9.3.1
31538	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

31538

Sample typemarine sediment

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31538	Photobacterium aplysiae strain GMD509 16S ribosomal RNA gene, partial sequence	AY781193	1504		299462

GC content

31538

GC-content (mol%)45

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium aplysiae sp. nov., a lipolytic marine bacterium isolated from eggs of the sea hare Aplysia kurodai.	Seo HJ, Bae SS, Yang SH, Lee JH, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63765-0	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27830	IJSEM 2293 2005 ( DOI 10.1099/ijs.0.63765-0 , PubMed 16280485 )
#31538	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27830
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Photobacterium aplysiae (KCTC 12383, JCM 12948, GMD509)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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