Name: Pseudoalteromonas byunsanensis FR1199
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134146

Type strain:

Species: Pseudoalteromonas byunsanensis

Strain Designation: FR1199

Culture col. no.: JCM 12483, KCTC 12274, CIP 109024, IMSNU 60186, KCTC 22992

Strain history: CIP <- 2005, JCM <- 2004, J. Chun, Seoul Nat. Univ., Seoul, Korea: strain FR1199

NCBI tax ID(s): 327939 (species)

SI-ID 232797

KCTC 12274, JCM 12483, CIP 109024

Section

Pseudoalteromonas byunsanensis FR1199 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas byunsanensis**
	Full Scientific Name (LPSN)	Pseudoalteromonas byunsanensis Park et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31530]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #117082]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.97

[Ref.: #31530]	Cell length	1.75 µm

[Ref.: #31530]	Cell width	0.65 µm

[Ref.: #31530]	Cell shape	rod-shaped
[Ref.: #117082]	Cell shape	rod-shaped

[Ref.: #31530]	Motility	yes
[Ref.: #117082]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.236

[Ref.: #31530]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #117082]

Culture medium

CIP Medium 13

[Ref.: #117082]

Culture medium growth

[Ref.: #117082]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31530]	growth	10-40 °C
[Ref.: #31530]	optimum	27.5 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #31530]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31530]			optimum	8
[Ref.: #31530]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31530]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31530]	Ability of spore formation	no
[Ref.: #117082]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.941

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31530]		NaCl		growth	0.5-5	%
[Ref.: #31530]		NaCl		optimum	1.75	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31530]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31530]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31530]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31530]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #31530]	mannitol ChEBI	+	carbon source
[Ref.: #31530]	mannose ChEBI	+	carbon source
[Ref.: #31530]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #117082]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #117082]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #117082]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #31530]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #31530]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31530]	catalase	+	1.11.1.6
[Ref.: #117082]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31530]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #31530]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117082]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #117082]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #117082]	22793	-	-	-	-	-	+	+	-	+	+	-	-	+	+	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117082]	11623	-	+	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31530]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment of Byunsan
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment of Byunsan
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #117082]	Sample type/isolated from	Environment, Sediment
[Ref.: #117082]	Geographic location (country and/or sea, region)	Byunsan peninsula
[Ref.: #117082]	Country	Republic of Korea
[Ref.: #117082]	Country ISO 3 Code	KOR
[Ref.: #117082]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #117082]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31530]	Pseudoalteromonas byunsanensis strain FR1199 16S ribosomal RNA gene, partial sequence	DQ011289	1461	GenBank	327939 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoalteromonas byunsanensis JCM 12483	GCA_001854475	scaffold	GenBank	327939 tax ID
[Ref.: #66792]	Pseudoalteromonas byunsanensis strain JCM 12483	327939.5	wgs	PATRIC	327939 tax ID	*
[Ref.: #66792]	Pseudoalteromonas byunsanensis JCM 12483	2916174752	draft	JGI IMG/M	327939 tax ID	*

[Ref.: #31530]	GC-content	39 mol%
[Ref.: #67770]	GC-content	39 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas byunsanensis JCM 12483 NCBI: GCA_001854475.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas byunsanensis strain JCM 12483 PATRIC: 327939.5
[Ref.: #69480]	gram-positive	no	99.197	no
[Ref.: #69480]	anaerobic	no	95.747	yes
[Ref.: #69480]	halophile	yes	50.642	no
[Ref.: #69480]	spore-forming	no	93.568	yes
[Ref.: #69480]	glucose-util	yes	93.731	yes
[Ref.: #69480]	motile	yes	91.925	no
[Ref.: #69480]	flagellated	yes	92.475	no
[Ref.: #69480]	aerobic	yes	84.338	yes
[Ref.: #69480]	thermophile	no	99.351	yes
[Ref.: #69480]	glucose-ferment	no	70.202	no

Availability in culture collections External links

[Ref.: #31530]

Culture collection no.

JCM 12483, KCTC 12274, CIP 109024, IMSNU 60186, KCTC 22992

[Ref.: #91744]

SI-ID 232797

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary.	Xu XW, Wu YH, Wang CS, Gao XH, Wang XG, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.017673-0	2009	*
Phylogeny	Pseudoalteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea.	Park YD, Baik KS, Yi H, Bae KS, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.63750-0	2005	*
Phylogeny	Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater.	Wu YH, Cheng H, Xu L, Jin XB, Wang CS, Xu XW	PLoS One	10.1371/journal.pone.0179997	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31530

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27824 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91744

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232797.1 )

#117082 Collection of Institut Pasteur ; Curators of the CIP; CIP 109024

#27824

IJSEM 2519 2005 ( DOI 10.1099/ijs.0.63750-0 , PubMed 16280520 )

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas byunsanensis JCM 12483

Pseudoalteromonas byunsanensis strain JCM 12483

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