Name: Pseudoalteromonas spongiae UST010723-006
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134140

Type strain:

Species: Pseudoalteromonas spongiae

Strain Designation: UST010723-006

Culture col. no.: NRRL B-41100, JCM 12884, CIP 108868

Strain history: CIP <- 2005, JCM <- 2004, S. Lau, Hong Kong Univ., Hong Kong, China: strain UST010723-006

NCBI tax ID(s): 298657 (species)

SI-ID 265399

JCM 12884, NRRL B-41100, CIP 108868

Section

Pseudoalteromonas spongiae UST010723-006 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Surface of the sponge Mycale adhaerens in Hong Kong waters.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas spongiae**
	Full Scientific Name (LPSN)	Pseudoalteromonas spongiae Lau et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31476]	Gram stain	negative
[Ref.: #123269]	Gram stain	negative

[Ref.: #31476]	Cell length	1.35 µm

[Ref.: #31476]	Cell width	0.5 µm

[Ref.: #31476]	Cell shape	rod-shaped
[Ref.: #123269]	Cell shape	rod-shaped

[Ref.: #31476]	Motility	no
[Ref.: #123269]	Motility	yes

[Ref.: #31476]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42048]

Culture medium

Marine agar (MA)

[Ref.: #42048]

Culture medium growth

[Ref.: #42048]

Culture medium composition

expand / minimize

[Ref.: #123269]

Culture medium

CIP Medium 13

[Ref.: #123269]

Culture medium growth

[Ref.: #123269]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #31476]		growth	08-44 °C
[Ref.: #31476]		optimum	26 °C
[Ref.: #42048]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #123269]		growth	10-37 °C
[Ref.: #123269]	no	growth	5 °C
[Ref.: #123269]	no	growth	41 °C

[Ref.: #31476]	Temperature range	mesophilic
[Ref.: #42048]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123269]	Temperature range	psychrophilic
[Ref.: #123269]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31476]			optimum	7.5
[Ref.: #31476]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31476]	Oxygen tolerance	aerobe
[Ref.: #123269]	Oxygen tolerance	obligate aerobe

[Ref.: #31476]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #31476]	NaCl		growth	02-06	%
[Ref.: #31476]	NaCl		optimum	4	%
[Ref.: #123269]	NaCl		growth	4-6	%
[Ref.: #123269]	NaCl	no	growth	0	%
[Ref.: #123269]	NaCl	no	growth	2	%
[Ref.: #123269]	NaCl	no	growth	8	%
[Ref.: #123269]	NaCl	no	growth	10	%

[Ref.: #31476]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123269]	esculin ChEBI	-	hydrolysis
[Ref.: #31476]	fructose ChEBI	+	carbon source
[Ref.: #31476]	gelatin ChEBI	+	carbon source
[Ref.: #31476]	leucine ChEBI	+	carbon source
[Ref.: #31476]	maltose ChEBI	+	carbon source
[Ref.: #31476]	mannose ChEBI	+	carbon source
[Ref.: #31476]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #123269]	nitrate ChEBI	-	reduction
[Ref.: #123269]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123269]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #31476]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123269]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #31476]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123269]	amylase	-
[Ref.: #123269]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123269]	caseinase	+	3.4.21.50
[Ref.: #31476]	catalase	+	1.11.1.6
[Ref.: #123269]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31476]	cytochrome oxidase	+	1.9.3.1
[Ref.: #123269]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #31476]	gelatinase	+
[Ref.: #123269]	gelatinase	+
[Ref.: #123269]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123269]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123269]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123269]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123269]	oxidase	+
[Ref.: #123269]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123269]	tryptophan deaminase	-
[Ref.: #123269]	tween esterase	+
[Ref.: #123269]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123269]	11520	-	+	+	+	-	+	-	-	+	+	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface of the sponge Mycale adhaerens in Hong Kong waters
[Ref.: #67770]	Host species	Mycale adhaerens

[Ref.: #123269]	Sample type/isolated from	Surface of sponge, Mycale adhaerens
[Ref.: #123269]	Geographic location (country and/or sea, region)	Hong Kong
[Ref.: #123269]	Country	China
[Ref.: #123269]	Country ISO 3 Code	CHN
[Ref.: #123269]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #123269]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31476]	Pseudoalteromonas spongiae strain UST010723-006 16S ribosomal RNA gene, partial sequence	AY769918	1425	GenBank	298657 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas spongiae UST010723-006	GCA_000238255	complete	GenBank	1117319 tax ID	*
[Ref.: #66792]	Pseudoalteromonas spongiae UST010723-006	1117319.3	wgs	PATRIC	1117319 tax ID	*
[Ref.: #66792]	Pseudoalteromonas spongiae UST010723-006	2775507273	complete	JGI IMG/M	1117319 tax ID	*

[Ref.: #31476]	GC-content	40.6 mol%
[Ref.: #67770]	GC-content	40.4-40.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas spongiae UST010723-006 UST010723-006 NCBI: GCA_000238255.3
[Ref.: #69480]	motile	yes	93.304	yes
[Ref.: #69480]	flagellated	yes	94.051	no
[Ref.: #69480]	gram-positive	no	99.14	yes
[Ref.: #69480]	anaerobic	no	95.575	yes
[Ref.: #69480]	aerobic	yes	86.172	no
[Ref.: #69480]	halophile	yes	66.654	no
[Ref.: #69480]	spore-forming	no	95.156	no
[Ref.: #69480]	thermophile	no	99.489	no
[Ref.: #69480]	glucose-util	yes	84.514	no
[Ref.: #69480]	glucose-ferment	no	70.557	no
[Ref.: #69480]	motile	yes	93.304	yes
[Ref.: #69480]	flagellated	yes	94.051	no
[Ref.: #69480]	gram-positive	no	99.14	yes
[Ref.: #69480]	anaerobic	no	95.575	yes
[Ref.: #69480]	aerobic	yes	86.172	no
[Ref.: #69480]	halophile	yes	66.654	no
[Ref.: #69480]	spore-forming	no	95.156	no
[Ref.: #69480]	thermophile	no	99.489	no
[Ref.: #69480]	glucose-util	yes	84.514	no
[Ref.: #69480]	glucose-ferment	no	70.557	no

Availability in culture collections External links

[Ref.: #31476]

Culture collection no.

NRRL B-41100, JCM 12884, CIP 108868

[Ref.: #91739]

SI-ID 265399

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas spongiae sp. nov., a novel member of the gamma-Proteobacteria isolated from the sponge Mycale adhaerens in Hong Kong waters.	Lau SCK, Tsoi MMY, Li X, Dobretsov S, Plakhotnikova Y, Wong PK, Qian PY	Int J Syst Evol Microbiol	10.1099/ijs.0.63638-0	2005	*
	ChrII-encoded DNA helicase: A preliminary study.	Tang B, Chen Z, Xia H, Wang R, Song X	Protein Pept Lett	10.2174/0929866530666221104112210	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31476

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27776 (see below)

#42048 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91739

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265399.1 )

#123269 Collection of Institut Pasteur ; Curators of the CIP; CIP 108868

#27776

IJSEM 1593 2005 ( DOI 10.1099/ijs.0.63638-0 , PubMed 16014487 )

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas spongiae UST010723-006 UST010723-006

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