Name: Roseateles chitosanitabidus 3001
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134139

Type strain:

Species: Roseateles chitosanitabidus

Strain Designation: 3001

Culture col. no.: IAM 14711, ATCC BAA-476, JCM 21276, NBRC 102408, CIP 108954

Strain history: CIP <- 2005, IAM

NCBI tax ID(s): 1336246 (strain), 65048 (species)

SI-ID 219423

IAM 14711, ATCC BAA-476, CCUG 52767, NBRC 102408, JCM 21276, CIP 108954

Section

Roseateles chitosanitabidus 3001 is an aerobe, Gram-negative, motile bacterium that was isolated from Soil in Matsue.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Roseateles*
	Species	**Roseateles chitosanitabidus**
	Full Scientific Name (LPSN)	Roseateles chitosanitabidus (Amakata et al. 2005) Liu et al. 2023

Synonym

Mitsuaria chitosanitabida

Information on morphological and physiological properties Morphology

[Ref.: #31467]	Gram stain	negative
[Ref.: #118238]	Gram stain	negative

[Ref.: #31467]	Cell length	3 µm

[Ref.: #31467]	Cell width	0.85 µm

[Ref.: #31467]	Cell shape	rod-shaped
[Ref.: #118238]	Cell shape	rod-shaped

[Ref.: #31467]	Motility	yes
[Ref.: #118238]	Motility	no

[Ref.: #31467]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34332]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #34332]

Culture medium growth

[Ref.: #34332]

Culture medium composition

expand / minimize

[Ref.: #118238]

Culture medium

CIP Medium 663

[Ref.: #118238]

Culture medium growth

[Ref.: #118238]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #118238]

Culture medium

CIP Medium 72

[Ref.: #118238]

Culture medium growth

[Ref.: #118238]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31467]	growth	20-34 °C
[Ref.: #31467]	optimum	25 °C
[Ref.: #34332]	growth	25 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #31467]	Temperature range	mesophilic
[Ref.: #34332]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31467]			optimum	7
[Ref.: #31467]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31467]

Oxygen tolerance

aerobe

[Ref.: #31467]

Ability of spore formation

[Ref.: #31467]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31467]	glucosamine ChEBI	+	carbon source
[Ref.: #31467]	glucose ChEBI	+	carbon source
[Ref.: #31467]	glycerol ChEBI	+	carbon source
[Ref.: #31467]	maltose ChEBI	+	carbon source
[Ref.: #31467]	nitrate ChEBI	+	reduction
[Ref.: #118238]	nitrate ChEBI	+	reduction
[Ref.: #118238]	nitrite ChEBI	-	reduction
[Ref.: #31467]	tween 40 ChEBI	+	carbon source
[Ref.: #31467]	tween 60 ChEBI	+	carbon source
[Ref.: #31467]	tween 80 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #118238]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31467]	catalase	+	1.11.1.6
[Ref.: #118238]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31467]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118238]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118238]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118238]	11572	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in Matsue
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shimane Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #118238]	Sample type/isolated from	Environment, Soil
[Ref.: #118238]	Country	Japan
[Ref.: #118238]	Country ISO 3 Code	JPN
[Ref.: #118238]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB006851 (>99% sequence identity) for Mitsuaria chitosanitabida from Microbeatlas

Aquatic Samples	83
Soil Samples	180
Animal Samples	39
Plant Samples	158
Total Samples	460

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #118238]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31467]	Mitsuaria chitosanitabida gene for 16S rRNA, partial sequence	AB006851	1490	GenBank	65048 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mitsuaria chitosanitabida ATCC BAA-476 = NBRC 102408	GCA_001598255	contig	GenBank	1336246 tax ID
[Ref.: #66792]	Mitsuaria chitosanitabida NBRC 102408	1349774.9	wgs	PATRIC	1336246 tax ID	*
[Ref.: #66792]	Mitsuaria chitosanitabida NBRC 102408	2731957693	draft	JGI IMG/M	1349774 tax ID	*

[Ref.: #31467]	GC-content	69.2 mol%
[Ref.: #67770]	GC-content	69.2 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mitsuaria chitosanitabida NBRC 102408 PATRIC: 1349774.9
[Ref.: #69480]	motile	yes	91.684	yes
[Ref.: #69480]	gram-positive	no	98.308	no
[Ref.: #69480]	anaerobic	no	98.191	yes
[Ref.: #69480]	halophile	no	98.266	no
[Ref.: #69480]	spore-forming	no	94.099	yes
[Ref.: #69480]	glucose-util	yes	86.629	no
[Ref.: #69480]	flagellated	yes	77.05	no
[Ref.: #69480]	aerobic	yes	91.351	yes
[Ref.: #69480]	glucose-ferment	no	88.587	no
[Ref.: #69480]	thermophile	no	99.391	no

Availability in culture collections External links

[Ref.: #31467]

Culture collection no.

IAM 14711, ATCC BAA-476, JCM 21276, NBRC 102408, CIP 108954

[Ref.: #91738]

SI-ID 219423

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Pelomonas aquatica sp. nov. and Pelomonas puraquae sp. nov., isolated from industrial and haemodialysis water.	Gomila M, Bowien B, Falsen E, Moore ERB, Lalucat J	Int J Syst Evol Microbiol	10.1099/ijs.0.65149-0	2007	*
Phylogeny	Mitsuaria chitosanitabida gen. nov., sp. nov., an aerobic, chitosanase-producing member of the 'Betaproteobacteria'.	Amakata D, Matsuo Y, Shimono K, Park JK, Yun CS, Matsuda H, Yokota A, Kawamukai M	Int J Syst Evol Microbiol	10.1099/ijs.0.63629-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31467

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27767 (see below)

#34332 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91738

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID219423.1 )

#118238 Collection of Institut Pasteur ; Curators of the CIP; CIP 108954

#27767

IJSEM 1927 2005 ( DOI 10.1099/ijs.0.63629-0 , PubMed 16166689 )

* These data were automatically processed and therefore are not curated

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Mitsuaria chitosanitabida NBRC 102408

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