Bizionia myxarmorum (ACAM 1058, CIP 108535, ADA-4)

Name: Bizionia myxarmorum (ACAM 1058, CIP 108535, ADA-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 134125

Type strain

Strain Designation ADA-4

Culture col. no. ACAM 1058 CIP 108535 ADA-4

NCBI tax ID(s) 291186

Special Collections CIP Literature strains

History CIP <- 2004, J. Bowman, Tasmania, Australia: strain ADA-4

Links

Bizionia myxarmorum ADA-4 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Unknown amphipod species.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265387

CIP 108535

@ref 20215

Last LPSN update 2026-05-29 08:38:15

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Bizionia

Species Bizionia myxarmorum

Full scientific name Bizionia myxarmorum Bowman and Nichols 2005

Synonyms (1)

"Algorimicrobium myxarmorum"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31431	negative	2.5 µm	0.4 µm	rod-shaped
121218	negative			rod-shaped
125439	negative				97.97
125438					95.095
125438	negative				96.875

Pigmentation

31431

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
34326	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
121218	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
31431	positive	optimum	14
34326	positive	growth	25
121218	positive	growth	5-25
121218	negative	growth	30
121218	negative	growth	37
121218	negative	growth	41
121218	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31431	aerobe
125439	obligate aerobe	98.434

Spore formation

@ref	Spore formation	Confidence
125438		90.833
125439		99.021

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31431	NaCl	positive	growth	0.2-2 %
31431	NaCl	positive	optimum	0.35 %
121218	NaCl	positive	growth	2-10 %
121218	NaCl		growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31431	30089 ChEBI	acetate	+	carbon source
31431	16449 ChEBI	alanine	+	carbon source
121218	16947 ChEBI	citrate	-	carbon source
121218	4853 ChEBI	esculin	-	hydrolysis
31431	5291 ChEBI	gelatin	+	carbon source
31431	27570 ChEBI	histidine	+	carbon source
121218	17632 ChEBI	nitrate	-	reduction
121218	16301 ChEBI	nitrite	-	reduction
31431	26271 ChEBI	proline	+	carbon source
31431	17822 ChEBI	serine	+	carbon source
31431	53426 ChEBI	tween 80	+	carbon source
31431	16199 ChEBI	urea	+	carbon source
31431	31011 ChEBI	valerate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121218	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
121218	15688 ChEBI	acetoin	-
121218	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121218	alcohol dehydrogenase	-	1.1.1.1
31431	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121218	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
121218	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121218	caseinase	-	3.4.21.50
121218	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121218	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121218	gamma-glutamyltransferase	+	2.3.2.2
31431	gelatinase	+
121218	gelatinase	+
121218	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121218	lipase	-
68382	lipase (C 14)	-		from API zym
121218	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121218	ornithine decarboxylase	-	4.1.1.17
121218	oxidase	+
121218	phenylalanine ammonia-lyase	+	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
121218	tryptophan deaminase	-
121218	tween esterase	-
31431	urease	+	3.5.1.5
121218	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121218	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121218	not determinedn.d.	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
121218	Unknown amphipod species	Vestfold hills	Antarctica	ATA	Antarctica	1999

Taxonmaps

69479

Global distribution of 16S sequence AY694002 (>99% sequence identity) for Bizionia myxarmorum subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	0
Animal Samples	0
Plant Samples	0
Total Samples	3

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121218	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM808620v1 assembly for Bizionia myxarmorum ADA-4	contig	GCA_008086205	291186.3	2995140490	291186	75.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31431	Bizionia myxarmorum strain ADA-4 16S ribosomal RNA gene, partial sequence	AY694002	1383		291186

GC content

31431

GC-content (mol%)43

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM808620v1 assembly for Bizionia myxarmorum ADA-4
BV-BRC: 291186.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.43	no
125439	gram_stain	BacteriaNetⓘ	negative	97.97	no
125439	motility	BacteriaNetⓘ	no	73.81	no
125439	spore_formation	BacteriaNetⓘ	no	99.02	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bizionia myxarmorum strain ADA-4
PATRIC: 291186.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.88	yes
125438	anaerobic	anaerobicⓘ	no	97.26	no
125438	spore-forming	spore-formingⓘ	no	90.83	no
125438	aerobic	aerobicⓘ	yes	86.47	no
125438	thermophilic	thermophileⓘ	no	97.75	yes
125438	flagellated	motile2+ⓘ	no	95.10	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
Phylogeny	Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus).	Song EJ, Lee MH, Seo MJ, Yim KJ, Hyun DW, Bae JW, Park SL, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0253-x	2014
Phylogeny	Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica.	Bercovich A, Vazquez SC, Yankilevich P, Coria SH, Foti M, Hernandez E, Vidal A, Ruberto L, Melo C, Marenssi S, Criscuolo M, Memoli M, Arguelles M, Mac Cormack WP	Int J Syst Evol Microbiol	10.1099/ijs.0.65599-0	2008
Phylogeny	Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.	Bowman JP, Nichols DS	Int J Syst Evol Microbiol	10.1099/ijs.0.63527-0	2005

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27737	IJSEM 1471 2005 ( DOI 10.1099/ijs.0.63527-0 , PubMed 16014468 )
#31431	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27737
#34326	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121218	Collection of Institut Pasteur ; Curators of the CIP; CIP 108535
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Bizionia myxarmorum (ACAM 1058, CIP 108535, ADA-4)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_008086205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media