Name: Bizionia myxarmorum ADA-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134125

Type strain:

Species: Bizionia myxarmorum

Strain Designation: ADA-4

Culture col. no.: ACAM 1058, CIP 108535

Strain history: CIP <- 2004, J. Bowman, Tasmania, Australia: strain ADA-4

NCBI tax ID(s): 291186 (species)

SI-ID 265387

CIP 108535

Section

Bizionia myxarmorum ADA-4 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Unknown amphipod species.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Bizionia*
	Species	**Bizionia myxarmorum**
	Full Scientific Name (LPSN)	Bizionia myxarmorum Bowman and Nichols 2005

Synonym

"Algorimicrobium myxarmorum"

Information on morphological and physiological properties Morphology

[Ref.: #31431]	Gram stain	negative
[Ref.: #121218]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #31431]	Cell length	2.5 µm

[Ref.: #31431]	Cell width	0.4 µm

[Ref.: #31431]	Cell shape	rod-shaped
[Ref.: #121218]	Cell shape	rod-shaped

[Ref.: #31431]	Motility	no
[Ref.: #121218]	Motility	no

[Ref.: #31431]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #34326]

Culture medium

Marine agar (MA)

[Ref.: #34326]

Culture medium growth

[Ref.: #34326]

Culture medium composition

expand / minimize

[Ref.: #121218]

Culture medium

CIP Medium 13

[Ref.: #121218]

Culture medium growth

[Ref.: #121218]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #31431]		optimum	14 °C
[Ref.: #34326]		growth	25 °C
[Ref.: #121218]		growth	5-25 °C
[Ref.: #121218]	no	growth	30 °C
[Ref.: #121218]	no	growth	37 °C
[Ref.: #121218]	no	growth	41 °C
[Ref.: #121218]	no	growth	45 °C

[Ref.: #31431]	Temperature range	psychrophilic
[Ref.: #34326]	Temperature range	mesophilic
[Ref.: #121218]	Temperature range	psychrophilic
[Ref.: #121218]	Temperature range	mesophilic
[Ref.: #121218]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31431]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Salt	Tested relation		Salt conc.
[Ref.: #31431]	NaCl		growth	0.2-2	%
[Ref.: #31431]	NaCl		optimum	0.35	%
[Ref.: #121218]	NaCl		growth	2-10	%
[Ref.: #121218]	NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31431]	acetate ChEBI	+	carbon source
[Ref.: #31431]	alanine ChEBI	+	carbon source
[Ref.: #121218]	citrate ChEBI	-	carbon source
[Ref.: #121218]	esculin ChEBI	-	hydrolysis
[Ref.: #31431]	gelatin ChEBI	+	carbon source
[Ref.: #31431]	histidine ChEBI	+	carbon source
[Ref.: #121218]	nitrate ChEBI	-	reduction
[Ref.: #121218]	nitrite ChEBI	-	reduction
[Ref.: #31431]	proline ChEBI	+	carbon source
[Ref.: #31431]	serine ChEBI	+	carbon source
[Ref.: #31431]	tween 80 ChEBI	+	carbon source
[Ref.: #31431]	urea ChEBI	+	carbon source
[Ref.: #31431]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121218]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121218]		acetoin ChEBI	-
[Ref.: #121218]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121218]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #31431]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121218]	amylase	-
[Ref.: #121218]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121218]	caseinase	-	3.4.21.50
[Ref.: #121218]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #121218]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121218]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #31431]	gelatinase	+
[Ref.: #121218]	gelatinase	+
[Ref.: #121218]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121218]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121218]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121218]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121218]	oxidase	+
[Ref.: #121218]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121218]	tryptophan deaminase	-
[Ref.: #121218]	tween esterase	-
[Ref.: #31431]	urease	+	3.5.1.5
[Ref.: #121218]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121218]	2791	not determinedn.d.	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121218]	11263	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #121218]	Sample type/isolated from	Unknown amphipod species
[Ref.: #121218]	Geographic location (country and/or sea, region)	Vestfold hills
[Ref.: #121218]	Country	Antarctica
[Ref.: #121218]	Country ISO 3 Code	ATA
[Ref.: #121218]	Continent	Antarctica
[Ref.: #121218]	Isolation date	1999
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AY694002 (>99% sequence identity) for Bizionia myxarmorum subclade from Microbeatlas

Aquatic Samples	3
Soil Samples
Animal Samples
Plant Samples
Total Samples	3

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121218]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31431]	Bizionia myxarmorum strain ADA-4 16S ribosomal RNA gene, partial sequence	AY694002	1383	GenBank	291186 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bizionia myxarmorum ADA-4	GCA_008086205	contig	GenBank	291186 tax ID	*
[Ref.: #66792]	Bizionia myxarmorum strain ADA-4	291186.3	wgs	PATRIC	291186 tax ID	*

[Ref.: #31431]

GC-content

43 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bizionia myxarmorum strain ADA-4 PATRIC: 291186.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bizionia myxarmorum strain ADA-4 PATRIC: 291186.3
[Ref.: #69480]	gram-positive	no	97.826	yes
[Ref.: #69480]	anaerobic	no	99.3	yes
[Ref.: #69480]	halophile	no	62.677	yes
[Ref.: #69480]	spore-forming	no	95.175	no
[Ref.: #69480]	glucose-util	yes	77.128	no
[Ref.: #69480]	motile	no	89.833	yes
[Ref.: #69480]	flagellated	no	95.532	yes
[Ref.: #69480]	aerobic	yes	90.217	yes
[Ref.: #69480]	thermophile	no	99.709	no
[Ref.: #69480]	glucose-ferment	no	92.495	no

Availability in culture collections External links

[Ref.: #31431]

Culture collection no.

ACAM 1058, CIP 108535

[Ref.: #91726]

SI-ID 265387

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus).	Song EJ, Lee MH, Seo MJ, Yim KJ, Hyun DW, Bae JW, Park SL, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0253-x	2014	*
Phylogeny	Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica.	Bercovich A, Vazquez SC, Yankilevich P, Coria SH, Foti M, Hernandez E, Vidal A, Ruberto L, Melo C, Marenssi S, Criscuolo M, Memoli M, Arguelles M, Mac Cormack WP	Int J Syst Evol Microbiol	10.1099/ijs.0.65599-0	2008	*
Phylogeny	Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.	Bowman JP, Nichols DS	Int J Syst Evol Microbiol	10.1099/ijs.0.63527-0	2005	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31431

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27737 (see below)

#34326 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91726

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265387.1 )

#121218 Collection of Institut Pasteur ; Curators of the CIP; CIP 108535

#27737

IJSEM 1471 2005 ( DOI 10.1099/ijs.0.63527-0 , PubMed 16014468 )

* These data were automatically processed and therefore are not curated

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Bizionia myxarmorum strain ADA-4

Bizionia myxarmorum strain ADA-4

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