Strain identifier
BacDive ID: 134125
Type strain:
Species: Bizionia myxarmorum
Strain Designation: ADA-4
Strain history: CIP <- 2004, J. Bowman, Tasmania, Australia: strain ADA-4
NCBI tax ID(s): 291186 (species)
General
@ref: 31431
BacDive-ID: 134125
keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, rod-shaped
description: Bizionia myxarmorum ADA-4 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Unknown amphipod species.
NCBI tax id
- NCBI tax id: 291186
- Matching level: species
strain history
- @ref: 121218
- history: CIP <- 2004, J. Bowman, Tasmania, Australia: strain ADA-4
doi: 10.13145/bacdive134125.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Bizionia
- species: Bizionia myxarmorum
- full scientific name: Bizionia myxarmorum Bowman and Nichols 2005
synonyms
- @ref: 20215
- synonym: Algorimicrobium myxarmorum
@ref: 31431
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Bizionia
species: Bizionia myxarmorum
strain designation: ADA-4
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
31431 | negative | 2.5 µm | 0.4 µm | rod-shaped | no | |
69480 | negative | 99.989 | ||||
121218 | negative | rod-shaped | no |
pigmentation
- @ref: 31431
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
34326 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
121218 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
31431 | positive | optimum | 14 | psychrophilic |
34326 | positive | growth | 25 | mesophilic |
121218 | positive | growth | 5-25 | psychrophilic |
121218 | no | growth | 30 | mesophilic |
121218 | no | growth | 37 | mesophilic |
121218 | no | growth | 41 | thermophilic |
121218 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 31431
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.997 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31431 | NaCl | positive | growth | 0.2-2 % |
31431 | NaCl | positive | optimum | 0.35 % |
121218 | NaCl | positive | growth | 2-10 % |
121218 | NaCl | no | growth | 0 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31431 | 30089 | acetate | + | carbon source |
31431 | 16449 | alanine | + | carbon source |
31431 | 5291 | gelatin | + | carbon source |
31431 | 27570 | histidine | + | carbon source |
31431 | 26271 | proline | + | carbon source |
31431 | 17822 | serine | + | carbon source |
31431 | 53426 | tween 80 | + | carbon source |
31431 | 16199 | urea | + | carbon source |
31431 | 31011 | valerate | + | carbon source |
121218 | 16947 | citrate | - | carbon source |
121218 | 4853 | esculin | - | hydrolysis |
121218 | 17632 | nitrate | - | reduction |
121218 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 121218
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
121218 | 15688 | acetoin | - | |
121218 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31431 | alkaline phosphatase | + | 3.1.3.1 |
31431 | gelatinase | + | |
31431 | urease | + | 3.5.1.5 |
121218 | oxidase | + | |
121218 | beta-galactosidase | - | 3.2.1.23 |
121218 | alcohol dehydrogenase | - | 1.1.1.1 |
121218 | gelatinase | + | |
121218 | amylase | - | |
121218 | DNase | + | |
121218 | caseinase | - | 3.4.21.50 |
121218 | catalase | + | 1.11.1.6 |
121218 | tween esterase | - | |
121218 | gamma-glutamyltransferase | + | 2.3.2.2 |
121218 | lecithinase | - | |
121218 | lipase | - | |
121218 | lysine decarboxylase | - | 4.1.1.18 |
121218 | ornithine decarboxylase | - | 4.1.1.17 |
121218 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
121218 | tryptophan deaminase | - | |
121218 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121218 | - | + | + | + | - | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121218 | - | + | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | + | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 121218
- sample type: Unknown amphipod species
- geographic location: Vestfold hills
- country: Antarctica
- origin.country: ATA
- continent: Antarctica
- isolation date: 1999
taxonmaps
- @ref: 69479
- File name: preview.99_63006.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_2813;97_3454;98_44597;99_63006&stattab=map
- Last taxonomy: Bizionia myxarmorum subclade
- 16S sequence: AY694002
- Sequence Identity:
- Total samples: 3
- aquatic counts: 3
Safety information
risk assessment
- @ref: 121218
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 31431
- description: Bizionia myxarmorum strain ADA-4 16S ribosomal RNA gene, partial sequence
- accession: AY694002
- length: 1383
- database: nuccore
- NCBI tax ID: 291186
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bizionia myxarmorum ADA-4 | GCA_008086205 | contig | ncbi | 291186 |
66792 | Bizionia myxarmorum strain ADA-4 | 291186.3 | wgs | patric | 291186 |
GC content
- @ref: 31431
- GC-content: 43
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 97.826 | yes |
anaerobic | no | 99.3 | yes |
halophile | no | 62.677 | yes |
spore-forming | no | 95.175 | no |
glucose-util | yes | 77.128 | no |
motile | no | 89.833 | yes |
flagellated | no | 95.532 | yes |
aerobic | yes | 90.217 | yes |
thermophile | no | 99.709 | no |
glucose-ferment | no | 92.495 | no |
External links
@ref: 31431
culture collection no.: ACAM 1058, CIP 108535
straininfo link
- @ref: 91726
- straininfo: 265387
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16014468 | Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia. | Bowman JP, Nichols DS | Int J Syst Evol Microbiol | 10.1099/ijs.0.63527-0 | 2005 | Amphipoda/microbiology, Animals, Antarctic Regions, Bacterial Typing Techniques, Copepoda/microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Environment, Eukaryota/microbiology, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Genotype, Ice Cover/microbiology, Molecular Sequence Data, Phenotype, Phylogeny, Quartz, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Species Specificity | Genetics |
Phylogeny | 18842857 | Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica. | Bercovich A, Vazquez SC, Yankilevich P, Coria SH, Foti M, Hernandez E, Vidal A, Ruberto L, Melo C, Marenssi S, Criscuolo M, Memoli M, Arguelles M, Mac Cormack WP | Int J Syst Evol Microbiol | 10.1099/ijs.0.65599-0 | 2008 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/chemistry/*classification/*genetics/isolation & purification, Genes, Bacterial, Genes, rRNA, Molecular Sequence Data, Phospholipids/chemistry, Phylogeny, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Water Microbiology | Genetics |
Phylogeny | 25103949 | Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus). | Song EJ, Lee MH, Seo MJ, Yim KJ, Hyun DW, Bae JW, Park SL, Roh SW, Nam YD | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0253-x | 2014 | Animals, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Intestines/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sea Cucumbers/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysis | Genetics |
Reference
@id | authors | title | doi/url | ID_cross_reference | pubmed | catalogue |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
31431 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27737 | 28776041 | |
34326 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6168 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
91726 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID265387.1 | |||
121218 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108535 | Collection of Institut Pasteur (CIP 108535) |