Name: Nocardioides salsibiostraticola KCTC 29158
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134015

Type strain:

Species: Nocardioides salsibiostraticola

Culture col. no.: KCTC 29158, JCM 18743, PAMC 26527

Strain history: <- SG Hong, KOPRI

NCBI tax ID(s): 1276547 (species)

Section

Nocardioides salsibiostraticola KCTC 29158 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from seawater.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides salsibiostraticola**
	Full Scientific Name (LPSN)	Nocardioides salsibiostraticola Cho et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31062]	Gram stain	positive

[Ref.: #31062]	Cell shape	rod-shaped

[Ref.: #31062]	Motility	no

[Ref.: #31062]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31062]	growth	05-25 °C
[Ref.: #31062]	optimum	20 °C
[Ref.: #67770]	growth	20 °C
[Ref.: #67771]	growth	20 °C

[Ref.: #31062]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #31062]			optimum	7.5
[Ref.: #31062]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31062]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31062]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31062]		NaCl		growth	0-5	%
[Ref.: #31062]		NaCl		optimum	0.5	%

[Ref.: #31062]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-8(H₄)
[Ref.: #67771]	Observation	quinones: MK-8(H4)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31062]	arabinose ChEBI	+	carbon source
[Ref.: #31062]	cellobiose ChEBI	+	carbon source
[Ref.: #31062]	esculin ChEBI	+	hydrolysis
[Ref.: #31062]	fructose ChEBI	+	carbon source
[Ref.: #31062]	galactose ChEBI	+	carbon source
[Ref.: #31062]	glucose ChEBI	+	carbon source
[Ref.: #31062]	glycerol ChEBI	+	carbon source
[Ref.: #31062]	lactose ChEBI	+	carbon source
[Ref.: #31062]	mannitol ChEBI	+	carbon source
[Ref.: #31062]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31062]	nitrate ChEBI	+	reduction
[Ref.: #31062]	proline ChEBI	+	carbon source
[Ref.: #31062]	pyruvate ChEBI	+	carbon source
[Ref.: #31062]	raffinose ChEBI	+	carbon source
[Ref.: #31062]	rhamnose ChEBI	+	carbon source
[Ref.: #31062]	salicin ChEBI	+	carbon source
[Ref.: #31062]	sucrose ChEBI	+	carbon source
[Ref.: #31062]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31062]	acid phosphatase	+	3.1.3.2
[Ref.: #31062]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31062]	catalase	+	1.11.1.6
[Ref.: #31062]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31062]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31062]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Biofilm formed in coastal seawater of the Norwegian Sea

[Ref.: #67771]	Sample type/isolated from	From biofilm, sea water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ny-A lesund
[Ref.: #67771]	Country	Norway
[Ref.: #67771]	Country ISO 3 Code	NOR
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC152461 (>99% sequence identity) for Nocardioides salsibiostraticola subclade from Microbeatlas

Aquatic Samples	1298
Soil Samples	1087
Animal Samples	408
Plant Samples	800
Total Samples	3593

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31062]	Nocardioides salsibiostraticola strain PAMC 26527 16S ribosomal RNA gene, partial sequence	KC152461	1461	GenBank	1276547 tax ID

[Ref.: #31062]	GC-content	69.3 mol%
[Ref.: #67770]	GC-content	69.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #31062]

Culture collection no.

KCTC 29158, JCM 18743, PAMC 26527

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides salsibiostraticola sp. nov., isolated from biofilm formed in coastal seawater.	Cho Y, Jang GI, Hwang CY, Kim EH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.051037-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31062

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27391 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27391

IJSEM 3800 2013 ( DOI 10.1099/ijs.0.051037-0 , PubMed 23667145 )

* These data were automatically processed and therefore are not curated

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