Name: Paenibacillus taihuensis THMBG22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134006

Type strain:

Species: Paenibacillus taihuensis

Strain Designation: THMBG22

Culture col. no.: CGMCC 1.10966, NBRC 108766

NCBI tax ID(s): 1156355 (species)

Section

Paenibacillus taihuensis THMBG22 is a facultative anaerobe, spore-forming, Gram-negative bacterium that was isolated from freshwater .

Gram-negative
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus taihuensis**
	Full Scientific Name (LPSN)	Paenibacillus taihuensis Wu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31038]	Gram stain	negative
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31038]	Cell length	3 µm

[Ref.: #31038]	Cell width	1.15 µm

[Ref.: #31038]	Cell shape	rod-shaped

[Ref.: #31038]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.368

[Ref.: #31038]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #31038]			growth	20-40 °C
[Ref.: #31038]			optimum	33.5 °C

[Ref.: #31038]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31038]			optimum	6.5
[Ref.: #31038]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31038]

Oxygen tolerance

facultative anaerobe

[Ref.: #31038]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31038]		NaCl		growth	0-1	%

[Ref.: #31038]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31038]	esculin ChEBI	+	hydrolysis
[Ref.: #31038]	gluconate ChEBI	+	carbon source
[Ref.: #31038]	glucose ChEBI	+	carbon source
[Ref.: #31038]	maltose ChEBI	+	carbon source
[Ref.: #31038]	mannose ChEBI	+	carbon source
[Ref.: #31038]	N-acetylglucosamine ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31038]	acid phosphatase	+	3.1.3.2
[Ref.: #31038]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31038]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31038]	catalase	+	1.11.1.6
[Ref.: #31038]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31038]	Sample type/isolated from	freshwater (river, lake, pond)
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ398861 (>99% sequence identity) for Paenibacillus taihuensis subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	242
Animal Samples	13
Plant Samples	2
Total Samples	264

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31038]	Paenibacillus taihuensis strain THMBG22 16S ribosomal RNA gene, partial sequence	JQ398861	1509	GenBank	1156355 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus taihuensis CGMCC 1.10966	GCA_003386535	scaffold	GenBank	1156355 tax ID	*
[Ref.: #66792]	Paenibacillus taihuensis strain CGMCC 1.10966	1156355.6	wgs	PATRIC	1156355 tax ID	*
[Ref.: #66792]	Paenibacillus taihuensis CGMCC 1.10966	2667527449	draft	JGI IMG/M	1156355 tax ID	*

[Ref.: #31038]

GC-content

55.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus taihuensis CGMCC 1.10966 NCBI: GCA_003386535.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus taihuensis CGMCC 1.10966 NCBI: GCA_003386535.1
[Ref.: #69480]	motile	yes	86.38	yes
[Ref.: #69480]	flagellated	yes	85.047	no
[Ref.: #69480]	gram-positive	yes	83.498	no
[Ref.: #69480]	anaerobic	no	98.899	yes
[Ref.: #69480]	aerobic	yes	92.282	no
[Ref.: #69480]	halophile	no	97.188	no
[Ref.: #69480]	spore-forming	yes	95.957	yes
[Ref.: #69480]	glucose-util	yes	89.489	no
[Ref.: #69480]	thermophile	no	99.322	no
[Ref.: #69480]	glucose-ferment	no	91.218	no

Availability in culture collections External links

[Ref.: #31038]

Culture collection no.

CGMCC 1.10966, NBRC 108766

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus montanisoli sp. nov., isolated from mountain area soil.	Wu M, Zong Y, Guo W, Wang G, Li M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003036	2018	*
Phylogeny	Paenibacillus panaciterrae sp. nov., isolated from ginseng-cultivated soil.	Nguyen NL, Kim YJ, Hoang VA, Kang JP, Singh P, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000540	2015	*
Phylogeny	Paenibacillus oenotherae sp. nov. and Paenibacillus hemerocallicola sp. nov., isolated from the roots of herbaceous plants.	Kim TS, Han JH, Joung Y, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.000329	2015	*
Phylogeny	Paenibacillus taihuensis sp. nov., isolated from an eutrophic lake.	Wu YF, Wu QL, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.050419-0	2013	*
Phylogeny	Paenibacillus baekrokdamisoli sp. nov., isolated from soil of crater lake.	Lee KC, Kim KK, Kim JS, Kim DS, Ko SH, Yang SH, Lee JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000968	2016	*
Phylogeny	Paenibacillus rhizoryzae sp. nov., isolated from rice rhizosphere.	Zhang L, Gao JS, Zhang S, Ali Sheirdil R, Wang XC, Zhang XX	Int J Syst Evol Microbiol	10.1099/ijs.0.000376	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31038

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27368 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27368

IJSEM 3652 2013 ( DOI 10.1099/ijs.0.050419-0 , PubMed 23625256 )

* These data were automatically processed and therefore are not curated

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Paenibacillus taihuensis CGMCC 1.10966

Paenibacillus taihuensis CGMCC 1.10966

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