Name: Paenibacillus endophyticus PECAE04
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134004

Type strain:

Species: Paenibacillus endophyticus

Strain Designation: PECAE04

Culture col. no.: LMG 27297, CECT 8234, CIP 110709

Strain history: CIP <- 2014, LMG <- 2010, 2012, E. Velazquez-Perez, Salamanca Univ., Salamanca Spain: strain PECAE04

NCBI tax ID(s): 1294268 (species)

SI-ID 382428

LMG 27297, CECT 8234, CIP 110709

Section

Paenibacillus endophyticus PECAE04 is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from plant associated.

Gram-positive
motile
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus endophyticus**
	Full Scientific Name (LPSN)	Paenibacillus endophyticus Carro et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31035]	Gram stain	positive
[Ref.: #119030]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31035]	Cell length	2.7 µm

[Ref.: #31035]	Cell width	0.8 µm

[Ref.: #31035]	Cell shape	rod-shaped
[Ref.: #119030]	Cell shape	rod-shaped

[Ref.: #31035]	Motility	yes
[Ref.: #119030]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.4

[Ref.: #31035]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #119030]

Culture medium

CIP Medium 72

[Ref.: #119030]

Culture medium growth

[Ref.: #119030]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119030]

Culture medium

CIP Medium 40

[Ref.: #119030]

Culture medium growth

[Ref.: #119030]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #31035]			growth	10-40 °C
[Ref.: #31035]			optimum	30 °C

[Ref.: #31035]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #31035]			optimum	7
[Ref.: #31035]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31035]

Oxygen tolerance

anaerobe

[Ref.: #31035]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31035]		NaCl		growth	0-2	%
[Ref.: #31035]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31035]	arabinose ChEBI	+	carbon source
[Ref.: #31035]	esculin ChEBI	+	hydrolysis
[Ref.: #31035]	glucose ChEBI	+	carbon source
[Ref.: #31035]	maltose ChEBI	+	carbon source
[Ref.: #31035]	N-acetylglucosamine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31035]		catalase	+	1.11.1.6
[Ref.: #31035]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #31035]	Sample type/isolated from	plant associated

[Ref.: #119030]	Sample type/isolated from	Plant, Root nodules, Cicer arietinum
[Ref.: #119030]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #119030]	Country	Spain
[Ref.: #119030]	Country ISO 3 Code	ESP
[Ref.: #119030]	Continent	Europe
[Ref.: #119030]	Isolation date	2010
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119030]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31035]	Paenibacillus endophyticus strain PECAE04 16S ribosomal RNA gene, partial sequence	KC447384	1482	GenBank	1294268 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus endophyticus CECT 8234	GCA_014192395	scaffold	GenBank	1294268 tax ID	*
[Ref.: #66792]	Paenibacillus endophyticus strain CECT 8234	1294268.3	wgs	PATRIC	1294268 tax ID	*
[Ref.: #66792]	Paenibacillus endophyticus CECT 8234	2824442830	draft	JGI IMG/M	1294268 tax ID	*

[Ref.: #31035]

GC-content

52.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus endophyticus CECT 8234 NCBI: GCA_014192395.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus endophyticus CECT 8234 NCBI: GCA_014192395.1
[Ref.: #69480]	flagellated	yes	92.246	no
[Ref.: #69480]	gram-positive	yes	88.391	yes
[Ref.: #69480]	anaerobic	no	99.312	no
[Ref.: #69480]	aerobic	yes	89.985	no
[Ref.: #69480]	halophile	no	94.136	yes
[Ref.: #69480]	spore-forming	yes	95.193	no
[Ref.: #69480]	glucose-util	yes	91.414	yes
[Ref.: #69480]	thermophile	no	99.867	yes
[Ref.: #69480]	motile	yes	91.809	yes
[Ref.: #69480]	glucose-ferment	no	91.216	no

Availability in culture collections External links

[Ref.: #31035]

Culture collection no.

LMG 27297, CECT 8234, CIP 110709

[Ref.: #91664]

SI-ID 382428

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus paridis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var. yunnanensis.	Wang M, Jiang XW, Tang SK, Zhi XY, Yang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003997	2020	*
Phylogeny	Paenibacillus sinopodophylli sp. nov., a siderophore-producing endophytic bacterium isolated from roots of Sinopodophyllum hexandrum (Royle) Ying.	Chen C, Xin K, Li M, Li X, Cheng J, Zhang L, Shen X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001458	2016	*
Phylogeny	Paenibacillus lupini sp. nov., isolated from nodules of Lupinus albus.	Carro L, Flores-Felix JD, Ramirez-Bahena MH, Garcia-Fraile P, Martinez-Hidalgo P, Igual JM, Tejedor C, Peix A, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.060830-0	2014	*
Phylogeny	Paenibacillus endophyticus sp. nov., isolated from nodules of Cicer arietinum.	Carro L, Flores-Felix JD, Cerda-Castillo E, Ramirez-Bahena MH, Igual JM, Tejedor C, Velazquez E, Peix A	Int J Syst Evol Microbiol	10.1099/ijs.0.050310-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31035

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27365 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91664

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID382428.1 )

#119030 Collection of Institut Pasteur ; Curators of the CIP; CIP 110709

#27365

IJSEM 4433 2013 ( DOI 10.1099/ijs.0.050310-0 , PubMed 23852155 )

* These data were automatically processed and therefore are not curated

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Paenibacillus endophyticus CECT 8234

Paenibacillus endophyticus CECT 8234

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