Name: Mucilaginibacter sabulilitoris SMS-12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133911

Type strain:

Species: Mucilaginibacter sabulilitoris

Strain Designation: SMS-12

Culture col. no.: KCTC 32111, CCUG 62214

NCBI tax ID(s): 1173583 (species)

SI-ID 410813

CCUG 62214

Section

Mucilaginibacter sabulilitoris SMS-12 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter sabulilitoris**
	Full Scientific Name (LPSN)	Mucilaginibacter sabulilitoris Kang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30855]	Gram stain	negative

[Ref.: #30855]	Cell length	2.5 µm

[Ref.: #30855]	Cell width	0.5 µm

[Ref.: #30855]	Cell shape	rod-shaped

[Ref.: #30855]	Motility	no

[Ref.: #62799]

Incubation period

2 days

[Ref.: #30855]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30855]	growth	04-32 °C
[Ref.: #30855]	optimum	25 °C
[Ref.: #62799]	growth	30 °C

[Ref.: #30855]	Temperature range	mesophilic
[Ref.: #62799]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30855]			optimum	7.25
[Ref.: #30855]			growth	4.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30855]	Oxygen tolerance	aerobe
[Ref.: #62799]	Oxygen tolerance	aerobe

[Ref.: #30855]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30855]		NaCl		growth	0-1.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30855]	arabinose ChEBI	+	carbon source
[Ref.: #30855]	cellobiose ChEBI	+	carbon source
[Ref.: #30855]	esculin ChEBI	+	hydrolysis
[Ref.: #30855]	fructose ChEBI	+	carbon source
[Ref.: #30855]	galactose ChEBI	+	carbon source
[Ref.: #30855]	glucose ChEBI	+	carbon source
[Ref.: #30855]	glycerol ChEBI	+	carbon source
[Ref.: #30855]	lactose ChEBI	+	carbon source
[Ref.: #30855]	maltose ChEBI	+	carbon source
[Ref.: #30855]	mannose ChEBI	+	carbon source
[Ref.: #30855]	melibiose ChEBI	+	carbon source
[Ref.: #30855]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30855]	nitrate ChEBI	+	reduction
[Ref.: #30855]	raffinose ChEBI	+	carbon source
[Ref.: #30855]	rhamnose ChEBI	+	carbon source
[Ref.: #30855]	ribitol ChEBI	+	carbon source
[Ref.: #30855]	sucrose ChEBI	+	carbon source
[Ref.: #30855]	trehalose ChEBI	+	carbon source
[Ref.: #30855]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30855]	acid phosphatase	+	3.1.3.2
[Ref.: #30855]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30855]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30855]	catalase	+	1.11.1.6
[Ref.: #30855]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30855]	Sample type/isolated from	soil

[Ref.: #62799]	Sample type/isolated from	Coastal sediment
[Ref.: #62799]	Sampling date	2009
[Ref.: #62799]	Geographic location (country and/or sea, region)	South Sea,Geojedo
[Ref.: #62799]	Country	Republic of Korea
[Ref.: #62799]	Country ISO 3 Code	KOR
[Ref.: #62799]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ739458 (>99% sequence identity) for Mucilaginibacter sabulilitoris subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	2402
Animal Samples	243
Plant Samples	950
Total Samples	3667

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30855]	Mucilaginibacter sabulilitoris strain SMS-12 16S ribosomal RNA gene, partial sequence	JQ739458	1444	GenBank	1173583 tax ID

[Ref.: #30855]

GC-content

41.8 mol%

Availability in culture collections External links

[Ref.: #30855]

Culture collection no.

KCTC 32111, CCUG 62214

[Ref.: #91638]

SI-ID 410813

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter inviolabilis sp. nov., isolated from the phycosphere of Haematococcus lacustris NIES 144 culture.	Lee SA, Le VV, Ko SR, Lee N, Oh HM, Ahn CY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004668	2021	*
Phylogeny	Mucilaginibacter pocheonensis sp. nov., with ginsenoside-converting activity, isolated from soil of a ginseng-cultivating field.	Zhao Y, Lee HG, Kim SK, Yu H, Jin F, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001069	2016	*
Phylogeny	Mucilaginibacter yixingensis sp. nov., isolated from vegetable soil.	Jing YT, Wang P, Zhang H, Dong WL, Jing YJ, Xiao YL, Cao H	Int J Syst Evol Microbiol	10.1099/ijsem.0.000941	2016	*
Phylogeny	Mucilaginibacter sabulilitoris sp. nov., isolated from marine sand in a firth.	Kang CH, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.045989-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30855

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27185 (see below)

#62799 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62214

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91638

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410813.1 )

#27185

IJSEM 2865 2013 ( DOI 10.1099/ijs.0.045989-0 , PubMed 23315407 )

* These data were automatically processed and therefore are not curated

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