Name: Stappia taiwanensis CC-SPIO-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133897

Type strain:

Species: Stappia taiwanensis

Strain Designation: CC-SPIO-10, CC-SP10-10

Culture col. no.: CCUG 59208, LMG 25538, CCM 7757, DSM 23284

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; CC-SPIO-10 <- A. B. Arun

NCBI tax ID(s): 992267 (species)

SI-ID 405040

DSM 23284

Other strains from Stappia taiwanensis

S. taiwanensis

Section

Stappia taiwanensis CC-SPIO-10 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hot spring.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Stappiaceae*
	Genus	*Stappia*
	Species	**Stappia taiwanensis**
	Full Scientific Name (LPSN)	Stappia taiwanensis Kämpfer et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30809]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #30809]	Cell length	0.9 µm

[Ref.: #30809]	Cell width	0.5 µm

[Ref.: #30809]	Cell shape	rod-shaped

[Ref.: #30809]	Motility	no

[Ref.: #61864]

Incubation period

2 days

[Ref.: #30809]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42661]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42661]

Culture medium growth

[Ref.: #42661]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42661]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #30809]	growth	10-45 °C
[Ref.: #30809]	optimum	27.5 °C
[Ref.: #42661]	growth	28 °C
[Ref.: #61864]	growth	30 °C

[Ref.: #30809]	Temperature range	mesophilic
[Ref.: #42661]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30809]			optimum	7
[Ref.: #30809]			growth	6.5-11.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30809]	Oxygen tolerance	aerobe
[Ref.: #61864]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30809]		NaCl		growth	01-06	%
[Ref.: #30809]		NaCl		optimum	2.5	%

[Ref.: #30809]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30809]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #30809]	acetate ChEBI	+	carbon source
[Ref.: #30809]	arabinose ChEBI	+	carbon source
[Ref.: #30809]	citrate ChEBI	+	carbon source
[Ref.: #30809]	galactose ChEBI	+	carbon source
[Ref.: #30809]	glucose ChEBI	+	carbon source
[Ref.: #30809]	lactate ChEBI	+	carbon source
[Ref.: #30809]	malate ChEBI	+	carbon source
[Ref.: #30809]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30809]	propionate ChEBI	+	carbon source
[Ref.: #30809]	pyruvate ChEBI	+	carbon source
[Ref.: #30809]	ribose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30809]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30809]	Sample type/isolated from	hot spring

[Ref.: #42661]	Sample type/isolated from	coastal hot spring
[Ref.: #42661]	Geographic location (country and/or sea, region)	Taituang, Lutao, Green Island
[Ref.: #42661]	Country	Taiwan
[Ref.: #42661]	Country ISO 3 Code	TWN
[Ref.: #42661]	Continent	Asia

[Ref.: #61864]	Sample type/isolated from	Coastal hot spring
[Ref.: #61864]	Sampling date	2008-06-25
[Ref.: #61864]	Geographic location (country and/or sea, region)	Taituang,Lutao,Green Island,Lutao
[Ref.: #61864]	Country	Taiwan
[Ref.: #61864]	Country ISO 3 Code	TWN
[Ref.: #61864]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR828537 (>99% sequence identity) for Stappia taiwanensis from Microbeatlas

Aquatic Samples	52
Soil Samples	47
Animal Samples	25
Plant Samples	2
Total Samples	126

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42661]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30809]	Stappia taiwanensis partial 16S rRNA gene, type strain CC-SPIO-10T	FR828537	1351	GenBank	992267 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stappia taiwanensis CCM 7757	GCA_014635285	contig	GenBank	992267 tax ID	*
[Ref.: #66792]	Stappia taiwanensis DSM 23284	GCA_013868145	scaffold	GenBank	992267 tax ID	*
[Ref.: #66792]	Stappia taiwanensis strain CCM 7757	992267.6	wgs	PATRIC	992267 tax ID	*
[Ref.: #66792]	Stappia taiwanensis strain DSM 23284	992267.3	wgs	PATRIC	992267 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Stappia taiwanensis DSM 23284 NCBI: GCA_013868145.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stappia taiwanensis DSM 23284 NCBI: GCA_013868145.1
[Ref.: #69480]	flagellated	yes	70.725	no
[Ref.: #69480]	gram-positive	no	98.739	no
[Ref.: #69480]	anaerobic	no	97.474	yes
[Ref.: #69480]	aerobic	yes	87.478	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	95.764	no
[Ref.: #69480]	thermophile	no	93.747	yes
[Ref.: #69480]	glucose-util	yes	89.668	yes
[Ref.: #69480]	motile	yes	84.033	yes
[Ref.: #69480]	glucose-ferment	no	91.483	no

Availability in culture collections External links

[Ref.: #42661]

Culture collection no.

CCUG 59208, LMG 25538, CCM 7757, DSM 23284

[Ref.: #91635]	SI-ID 405040	*
[Ref.: #91636]	SI-ID 411954	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Stappia sediminis sp. nov., isolated from rhizosphere soil of coastal herb Zoysia matrella within the Beibu Gulf.	Li M, Yi X, Li F, Feng Y, Liu Y, Gao C	Arch Microbiol	10.1007/s00203-021-02674-z	2022	*
Phylogeny	Stappia albiluteola sp. nov., isolated from marine sediment.	Jiang S, Sun YY, Lian FB, Zhang XK, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004807	2021	*
Phylogeny	Stappia taiwanensis sp. nov., isolated from a coastal thermal spring.	Kampfer P, Arun AB, Frischmann A, Busse HJ, Young CC, Rekha PD, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.044966-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30809

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27140 (see below)

#42661

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23284

#61864 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59208

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91635

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405040.1 )

#91636

#27140

IJSEM 1350 2013 ( DOI 10.1099/ijs.0.044966-0 , PubMed 22798655 )

* These data were automatically processed and therefore are not curated

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Stappia taiwanensis DSM 23284

Stappia taiwanensis DSM 23284

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