Name: Pseudoalteromonas arabiensis k53
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133879

Type strain:

Species: Pseudoalteromonas arabiensis

Strain Designation: k53

Culture col. no.: JCM 17292, NCIMB 14688

Strain history: H. Matsuyama k53.

NCBI tax ID(s): 874454 (species)

Section

Pseudoalteromonas arabiensis k53 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas arabiensis**
	Full Scientific Name (LPSN)	Pseudoalteromonas arabiensis corrig. Matsuyama et al. 2013

Synonym

Pseudoalteromonas arabianensis

Information on morphological and physiological properties Morphology

[Ref.: #30751]	Gram stain	negative

[Ref.: #30751]	Cell length	1.25 µm

[Ref.: #30751]	Cell width	0.65 µm

[Ref.: #30751]	Cell shape	rod-shaped

[Ref.: #30751]	Motility	yes

[Ref.: #30751]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30751]	growth	06-35 °C
[Ref.: #30751]	optimum	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #30751]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30751]			optimum	7.5
[Ref.: #30751]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30751]

Oxygen tolerance

aerobe

[Ref.: #30751]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30751]		NaCl		optimum	2.5	%

[Ref.: #30751]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30751]	alanine ChEBI	+	carbon source
[Ref.: #30751]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30751]	arabinose ChEBI	+	carbon source
[Ref.: #30751]	aspartate ChEBI	+	carbon source
[Ref.: #30751]	citrate ChEBI	+	carbon source
[Ref.: #30751]	dextrin ChEBI	+	carbon source
[Ref.: #30751]	esculin ChEBI	+	hydrolysis
[Ref.: #30751]	glucose ChEBI	+	carbon source
[Ref.: #30751]	glutamate ChEBI	+	carbon source
[Ref.: #30751]	maltose ChEBI	+	carbon source
[Ref.: #30751]	mannose ChEBI	+	carbon source
[Ref.: #30751]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30751]	nitrate ChEBI	+	reduction
[Ref.: #30751]	propionate ChEBI	+	carbon source
[Ref.: #30751]	serine ChEBI	+	carbon source
[Ref.: #30751]	sorbitol ChEBI	+	carbon source
[Ref.: #30751]	succinate ChEBI	+	carbon source
[Ref.: #30751]	sucrose ChEBI	+	carbon source
[Ref.: #30751]	threonine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30751]	acid phosphatase	+	3.1.3.2
[Ref.: #30751]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30751]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30751]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30751]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Sediment in the Arabian Sea in the Indian Ocean at a depth of 3,615 m (16° 45' 01" N 69° 00' 02" E)
[Ref.: #67770]	Geographic location	16.7503°/69.0006°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30751]	Pseudoalteromonas arabiensis gene for 16S ribosomal RNA, partial sequence	AB576636	1501	GenBank	874454 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoalteromonas arabiensis JCM 17292	GCA_001550155	scaffold	GenBank	874454 tax ID
[Ref.: #66792]	Pseudoalteromonas arabiensis strain JCM 17292	874454.3	wgs	PATRIC	874454 tax ID	*
[Ref.: #66792]	Pseudoalteromonas arabiensis JCM 17292	2675903557	draft	JGI IMG/M	874454 tax ID	*

[Ref.: #30751]

GC-content

43 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas arabiensis strain JCM 17292 PATRIC: 874454.3
[Ref.: #69480]	motile	yes	93.271	yes
[Ref.: #69480]	flagellated	yes	91.408	no
[Ref.: #69480]	gram-positive	no	98.964	yes
[Ref.: #69480]	anaerobic	no	94.457	no
[Ref.: #69480]	halophile	yes	51.405	no
[Ref.: #69480]	spore-forming	no	95.001	yes
[Ref.: #69480]	thermophile	no	99.488	yes
[Ref.: #69480]	glucose-util	yes	92.754	no
[Ref.: #69480]	aerobic	yes	84.738	yes
[Ref.: #69480]	glucose-ferment	no	72.656	no

Availability in culture collections External links

[Ref.: #30751]

Culture collection no.

JCM 17292, NCIMB 14688

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas profundi sp. nov., isolated from a deep-sea seamount.	Zhang DC, Liu YX, Huang HJ, Wu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001366	2016	*
Phylogeny	Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium.	Matsuyama H, Sawazaki K, Minami H, Kasahara H, Horikawa K, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.055558-0	2013	*
Phylogeny	Pseudoalteromonas arabiensis sp. nov., a marine polysaccharide-producing bacterium.	Matsuyama H, Minami H, Kasahara H, Kato Y, Murayama M, Yumoto I	Int J Syst Evol Microbiol	10.1099/ijs.0.043604-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30751

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27082 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27082

IJSEM 1805 2005 ( DOI 10.1099/ijs.0.043604-0 , PubMed 22962336 )

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas arabiensis strain JCM 17292

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