Name: Lysinimonas soli SGM3-12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133868

Type strain:

Species: Lysinimonas soli

Strain Designation: SGM3-12

Culture col. no.: KACC 13362, NBRC 107106

NCBI tax ID(s): 1074233 (species)

Section

Lysinimonas soli SGM3-12 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from soil.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Lysinimonas*
	Species	**Lysinimonas soli**
	Full Scientific Name (LPSN)	Lysinimonas soli Jang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30719]	Gram stain	positive

[Ref.: #30719]	Cell length	2.1 µm

[Ref.: #30719]	Cell width	0.45 µm

[Ref.: #30719]	Cell shape	rod-shaped

[Ref.: #30719]	Motility	no

[Ref.: #30719]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30719]			growth	10-37 °C
[Ref.: #30719]			optimum	28 °C

[Ref.: #30719]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30719]			optimum	7
[Ref.: #30719]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30719]

Oxygen tolerance

aerobe

[Ref.: #30719]

Ability of spore formation

[Ref.: #30719]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30719]	4-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #30719]	acetate ChEBI	+	carbon source
[Ref.: #30719]	fucose ChEBI	+	carbon source
[Ref.: #30719]	glycogen ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30719]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30719]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN378395 (>99% sequence identity) for Lysinimonas soli subclade from Microbeatlas

Aquatic Samples	585
Soil Samples	2176
Animal Samples	460
Plant Samples	159
Total Samples	3380

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30719]	Lysinimonas soli strain SGM3-12 16S ribosomal RNA gene, partial sequence	JN378395	1419	GenBank	1074233 tax ID

[Ref.: #30719]

GC-content

67.3 mol%

Availability in culture collections External links

[Ref.: #30719]

Culture collection no.

KACC 13362, NBRC 107106

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Naasia aerilata gen. nov., sp. nov., a member of the family Microbacteriaceae isolated from air.	Weon HY, Kim SJ, Jang YH, Hamada M, Tamura T, Ahn JH, Suzuki KI, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.046599-0	2012	*
Phylogeny	Lysinimonas soli gen. nov., sp. nov., isolated from soil, and reclassification of Leifsonia kribbensis Dastager et al. 2009 as Lysinimonas kribbensis sp. nov., comb. nov.	Jang YH, Kim SJ, Tamura T, Hamada M, Weon HY, Suzuki KI, Kwon SW, Kim WG	Int J Syst Evol Microbiol	10.1099/ijs.0.042945-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30719

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27050 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27050

IJSEM 1403 2013 ( DOI 10.1099/ijs.0.042945-0 , PubMed 22821735 )

* These data were automatically processed and therefore are not curated

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